Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04700 181 / 2e-47 Ankyrin repeat family protein (.1) AT3G18670 177 / 2e-46 Ankyrin repeat family protein (.1) AT5G04690 169 / 2e-43 Ankyrin repeat family protein (.1) AT5G35810 155 / 2e-41 Ankyrin repeat family protein (.1) AT5G04730 150 / 9e-38 Ankyrin-repeat containing protein (.1) AT5G04680 150 / 4e-37 Ankyrin repeat family protein (.1) AT3G54070 145 / 3e-36 Ankyrin repeat family protein (.1) AT1G48720 55 / 6e-09 unknown protein AT5G54700 59 / 2e-08 Ankyrin repeat family protein (.1) AT3G12360 56 / 1e-07 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048832 [exp] 691 / 0 AT3G18670 195 / 2e-53 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 288 / 2e-84 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 216 / 1e-58 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G015750 [exp] 207 / 2e-58 AT3G18670 144 / 1e-37 Ankyrin repeat family protein (.1) Potri.011G019500 [exp] 211 / 4e-57 AT3G18670 105 / 2e-23 Ankyrin repeat family protein (.1) Potri.011G016300 [exp] 208 / 1e-56 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.006G281600 [exp] 208 / 1e-56 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.008G022900 [exp] 209 / 2e-56 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 209 / 3e-56 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003282 [exp] 558 / 0 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10014701 [exp] 486 / 7e-159 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10000489 [exp] 461 / 4e-151 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10016672 [exp] 353 / 8e-107 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10014030 [exp] 203 / 3e-54 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10019887 [exp] 202 / 1e-53 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10027721 [exp] 197 / 3e-53 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10038357 [exp] 183 / 1e-47 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10000916 [exp] 175 / 1e-46 AT1G03670 52 / 1e-06 ankyrin repeat family protein (.1) Lus10035567 [exp] 145 / 1e-36 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.002G048666.1 pacid=42780190 polypeptide=Potri.002G048666.1.p locus=Potri.002G048666 ID=Potri.002G048666.1.v4.1 annot-version=v4.1 ATGATCGTTACATCTTCTTCAAACCCAGCCCCTCAGGTGGGTACATCTAATTCTGCAATCCCGACCCCTCAGGTGGTTGCAGCCTCTTCAAACCCTCAGG TGGTTACATCTTCTTCAAACCCAGCCCCTCAGGTGGGTACATCTTCTGCAAACCCGACCCCTCAGGTGGTTGCAGCCTCTTCAAACCCTCAGGTGGTTCC ATCTTCTTCGAGAGAAACCCCTCAGGTGGGTACATCTTCTGCAAACCCGACCCCTCGGGTGGTTGCAGCCTCTTCAAACCCTCAGGTGGTTCCATCTTCT TCGAGAGCAACCCCTCAGGTGGAAGATGAGAAGACGGTTTATCTACCTGTTTTCGAAGTAGGGAACTATGAAGCATGGAGCAAGAAGATGGTAGATGTAT TAACTTCACAGCATTTGTGGGATATAGTGCAATGTGGGTATAAGCCACCCAAAGATACCACTGAACTGGCAAAATGGGAAAATAGTCAGAAAGATGGATA TCGTGAAGCTCAGAACAAGAACGCAAAGGCCTGGATGTTAATTCATCGAGCAGTTGGCGTGAAAATAATGGAGGAAGTACTGTTTGCTTCTGACAAGTCC ACAAAGAATATTACTGGCATATTAAAAAGCTTCGATCAGAAGCGTTACGCGGACAAGCCGAACAACGAACTGATCGGAGAAGTACTCAGAGAGCCACATA TGGTGGAATTAGTGGCAACGTCACACGATGTTTGGAAGATGTTGAAGACTTACTCAGACAAGCACAAGGAAAATCAGAAGACAACGCCTGAAGAATCTAA ACCCGTACAATTAAAGACTAGCCCCGTGGATCTTCATCTAGAGGATACCACCAGATCGAGCTTGTTTCAATATGCCATGAGCGATGGTTGGGACAAAGTG ATTGAGATCTATACAAGAAAATCAGTAGCTCACTGTGCAAAAATCACCAATTCAGGCAACACAGCGTTACACATAGCAGTTATGGATGGCAAAAAAACAA CAGTGGAGCAACTGGTAAGCCTAATGTCCATCGAAGAAGCCGCTAAGGCTCTACGAGTAAAAAATGAACGGGGAAATACACCTCTCCATCTGGCTGCTTT TGTGGGGAACGCCTCGTTGTGTGATTGCCTTGCTAGTAAAATTTATTTGGACGAGGAGTTTCGGAATTCATCAAGAAACGAGCAAGACAAGAACAATCAG AATTCATCAGACAAGATAGGAGCCGGGTATGAAAAATATTGCATATTAGGCGAACGTAACAAGGAAAATCAGACCCCATTGTTCTTGGCTGCTGTCATGG GTAAAACAGATGCCTTTCTATGTTTACACAGTCATGTTCTTCACAGATACCGCGAATCATATTACACAGGGGGCAAATCATTTTACACAGGGAATAAGGG CGATACCATTCTCCACGTCGCCATCTCTGGAGAATATTTCGATCTAGCATTCCAAATAATTCATTTGTATCCAAAACTTGTTGACATGAAAAACGAAAGA GGAATGTCTCCGCTCCATTGTTTAGCGAGTAGACATACAGCCTTCAAAAGTGGCGTCCACCTTCGTCCTTACCACAACATCATATACCACTGTACATTTG TTGATCGACTAAAGTGGACAAAAGATGAGGGCGAAGCATATAGAAAGCAACCTGGCACCACAAATCGGCCATCCCAAAACAGGAACAATAATCGTTGTCC AGACAACTATCAGACATGTTTTCACTTCTTTACATCGATGTGCAGGGCTTTTATTTGCATTGCAGGTATACAACGACAAGTGAAACAAGGAGAACTCCTG CCAACTACATCTCAGGCATCCCATGATACTAACAATTCCCTGTCTCCAATCAAGAAATCAAGTTCGTGGCTGAAGAAAGTTTTGGGAGAAGATCAAGAGC AAGTGAACCTTCGATCATCTAGAGAAGGCAGATTAGTTCCTCCAAATTATGATACTATCGTTGAATTATTGAAGCTTGGATCGAAAGCAATGTTGGTCAT TCTTGGATTAGGATCAATGGAGATAAGAAAGATAGGACTGAAGAAAGAGAAGCACACATGGTCTGTTCAGGTAATGAACGAGCTTCTTCGAGAGGGTAAG TTGTACAAGTTCGAGAGCGGTGAGATAAGTGGGAGCCCCAAGCTACGATCTGAGTTATCCGACTCCAAAGCAATTAAACAGTCTGAAGGCAGTGAGAAAG GGGAGCCCGCATCTTCTAAATTGGAAAAGCCAGAGACACCCCTATTAATTGCGGCAAGGAATGGCATCACTGAAATCATGGAGAAAATCTTACATGATTT TCCTCACGCGGTTCACGACGAAGACACGCATAAGAAGAATGTGGTGCTGTTGGCAGTGCAATATAGGCAGCCACATGTTTATCAGTTCTTGCTAAAGAGA AGGAAGAAGAACGAGGAACTAGACAGGATCTTTCTCCAGTTTGATGACCAGGGAAATAGCGCAAGGCATCTTGCAGCTGCCACGATTGGAGATTATAAGC CTTGGCGCATTCCAGGAGCTGCTTTACAATTGCAATGGGAAATCAAATGGTATAAGTATGTTAAGAATTCCATGCCACAAAACTTCTTTCGTCGCCTTAA CTATAGAAGCGAGACCCCGAAGGAAATATTCAACAAGTCACACCAAGAACTTGTTAAAAGTGGAGGCGCGTGGCTAACCAACACATCCCAATCCTGCTCC GTGGTGGCAGCCCTCATTGCCACTGTCGCCTTCGCAACATCAGCCAACGTCCCTGGCGGAAACGCGGAACAAACTGGCACTCCATTCTTCGCAAACCATA TTGCATTCAAAGTATTTGCTGTCTCATCTCTCGTGGCTCTCTGCTTCTCAATCACTTCCGTGATCATGTTTCTTGCAATACTAACTTCTAGGTACGAAGC CAAGGATTTTGGCGAAGATTTGCCAACAAAAGTTTTGCTTGGCTTAACATCGTTGTTTGTGTCCATAGCTGCCATATTGTTATGTTTTTGTGCGGGGCAT TTCTTCGTGCTTAGTGATGAACTGAAGTTCGCAGCTTTTCCGCTGTATGGAGTGACTTGCCTGCCGGTGACTTTTTTTGCTATAGCACAGTTTCCATTGT ACATTGATCTTATAAAGGCTACATTGGCAACGGTGCCACAACGTAGGTATGTGGTGGATACTGCTGAAAGGGACACTAATTCCTCTCCCAAGAGTGACGG CTCAAATCAACCTTCAAGTCACAAATCTCTACCGGATCAAGGAAATGGAGGCTAA
AA sequence Show only first row Show all	>Potri.002G048666.1 pacid=42780190 polypeptide=Potri.002G048666.1.p locus=Potri.002G048666 ID=Potri.002G048666.1.v4.1 annot-version=v4.1 MIVTSSSNPAPQVGTSNSAIPTPQVVAASSNPQVVTSSSNPAPQVGTSSANPTPQVVAASSNPQVVPSSSRETPQVGTSSANPTPRVVAASSNPQVVPSS SRATPQVEDEKTVYLPVFEVGNYEAWSKKMVDVLTSQHLWDIVQCGYKPPKDTTELAKWENSQKDGYREAQNKNAKAWMLIHRAVGVKIMEEVLFASDKS TKNITGILKSFDQKRYADKPNNELIGEVLREPHMVELVATSHDVWKMLKTYSDKHKENQKTTPEESKPVQLKTSPVDLHLEDTTRSSLFQYAMSDGWDKV IEIYTRKSVAHCAKITNSGNTALHIAVMDGKKTTVEQLVSLMSIEEAAKALRVKNERGNTPLHLAAFVGNASLCDCLASKIYLDEEFRNSSRNEQDKNNQ NSSDKIGAGYEKYCILGERNKENQTPLFLAAVMGKTDAFLCLHSHVLHRYRESYYTGGKSFYTGNKGDTILHVAISGEYFDLAFQIIHLYPKLVDMKNER GMSPLHCLASRHTAFKSGVHLRPYHNIIYHCTFVDRLKWTKDEGEAYRKQPGTTNRPSQNRNNNRCPDNYQTCFHFFTSMCRAFICIAGIQRQVKQGELL PTTSQASHDTNNSLSPIKKSSSWLKKVLGEDQEQVNLRSSREGRLVPPNYDTIVELLKLGSKAMLVILGLGSMEIRKIGLKKEKHTWSVQVMNELLREGK LYKFESGEISGSPKLRSELSDSKAIKQSEGSEKGEPASSKLEKPETPLLIAARNGITEIMEKILHDFPHAVHDEDTHKKNVVLLAVQYRQPHVYQFLLKR RKKNEELDRIFLQFDDQGNSARHLAAATIGDYKPWRIPGAALQLQWEIKWYKYVKNSMPQNFFRRLNYRSETPKEIFNKSHQELVKSGGAWLTNTSQSCS VVAALIATVAFATSANVPGGNAEQTGTPFFANHIAFKVFAVSSLVALCFSITSVIMFLAILTSRYEAKDFGEDLPTKVLLGLTSLFVSIAAILLCFCAGH FFVLSDELKFAAFPLYGVTCLPVTFFAIAQFPLYIDLIKATLATVPQRRYVVDTAERDTNSSPKSDGSNQPSSHKSLPDQGNGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04700			Ankyrin repeat family protein ...		Potri.002G048666 [exp]	0	1
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Potri.006G252100 [exp]	3.16	0.8267
AT5G23750			Remorin family protein (.1.2)		Potri.003G124400 [exp]	6.48	0.8258
AT4G38040			Exostosin family protein (.1)		Potri.001G072500 [exp]	12.48	0.7866
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	15.77	0.8130
AT4G32330			TPX2 (targeting protein for Xk...		Potri.018G027500 [exp]	15.87	0.8053
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.005G219600 [exp]	21.49	0.7749
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.003G114100 [exp]	25.29	0.7981	MYB85.1
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.003G066300 [exp]	26.45	0.8058
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	26.49	0.7855	FAD2.3
AT5G25820			Exostosin family protein (.1)		Potri.006G239000 [exp]	29.73	0.7548

Compare expression of checked genes

Potri.002G048666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.