Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03070 394 / 2e-140 Bax inhibitor-1 family protein (.1.2) AT3G63310 384 / 7e-137 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) AT4G02690 358 / 1e-126 Bax inhibitor-1 family protein (.1) AT4G14730 265 / 4e-90 Bax inhibitor-1 family protein (.1) AT4G15470 258 / 5e-87 Bax inhibitor-1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214000 [exp] 415 / 3e-149 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2) Potri.008G157100 [exp] 306 / 3e-106 AT3G63310 243 / 4e-81 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) Potri.005G213900 [exp] 281 / 4e-96 AT3G63310 259 / 9e-88 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) Potri.010G028900 [exp] 254 / 2e-85 AT4G15470 348 / 2e-122 Bax inhibitor-1 family protein (.1) Potri.008G199200 [exp] 251 / 3e-84 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042631 [exp] 376 / 2e-133 AT1G03070 408 / 5e-146 Bax inhibitor-1 family protein (.1.2) Lus10022085 [exp] 376 / 2e-133 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2) Lus10004077 [exp] 365 / 2e-129 AT1G03070 404 / 2e-144 Bax inhibitor-1 family protein (.1.2) Lus10041240 [exp] 246 / 6e-82 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1) Lus10021950 [exp] 180 / 2e-56 AT4G15470 288 / 8e-99 Bax inhibitor-1 family protein (.1) Lus10004078 [exp] 71 / 2e-14 AT4G02690 85 / 2e-19 Bax inhibitor-1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0453 [poplar] [flax] Apoptosis-Inhib PF01027 [poplar] [flax] Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence Show only first row Show all	>Potri.002G049000.1 pacid=42777247 polypeptide=Potri.002G049000.1.p locus=Potri.002G049000 ID=Potri.002G049000.1.v4.1 annot-version=v4.1 ATGTGGGCACAGTCGTACGGGAAGACTGACTTGGAGGCCGGAGCGAGGCCTTTGTATCCAATGATGCTTGAAAGCCCGCAACTCCGGTGGGCCTTTATTC GTAAAGTGTATTCAATCTTGTGCTTTCAATTACTTATAACAATCGCGGTGGCGGCTATGGTTGTTTCTATCCGTCCGATTGCCGTCTTCTTTTCGACTAC TGGGGCCGGGTTGGCGCTCTATATAGTGCTTATCCTCACACCCTTTATTACTCTGTTGCCTATGTATTACTATCACCAGAAGCATCCTGTGAATTACTTT CTGCTAGGGATTTTTACCATCTCTCTCGCCTTTGCTGTTGGCTTAACTTGTGCCTTTACTGAAGGAAAGGTGATTCTGGAGTCCGCGATTCTGACAACTG TGGTGGTTGTCAGTCTCACTATGTACACATTCTGGGCAGCTAGGAGAGGCCATGATTTTAACTTCCTAGGCCCCTTCTTGTTTGGTGCAGTCATGGTTCT TATGGTATTTGCTTTCATCCAGATTCTCTTTCCATTGGGCAGAATCTCTGTGATGATTTATGGGTGCCTGGCTTCAATCATATTCTGTGGATACATCATA TATGACACCGATAACCTAATCAAGCGTTTCAGTTATGATGAATACATATGGGCCTCAGTGAGTTTGTATCTGGACATCCTCAATCTCTTCCTCGCGCTGC TAACCATCTTCAGAGCCGCCGATAGCTGA
AA sequence Show only first row Show all	>Potri.002G049000.1 pacid=42777247 polypeptide=Potri.002G049000.1.p locus=Potri.002G049000 ID=Potri.002G049000.1.v4.1 annot-version=v4.1 MWAQSYGKTDLEAGARPLYPMMLESPQLRWAFIRKVYSILCFQLLITIAVAAMVVSIRPIAVFFSTTGAGLALYIVLILTPFITLLPMYYYHQKHPVNYF LLGIFTISLAFAVGLTCAFTEGKVILESAILTTVVVVSLTMYTFWAARRGHDFNFLGPFLFGAVMVLMVFAFIQILFPLGRISVMIYGCLASIIFCGYII YDTDNLIKRFSYDEYIWASVSLYLDILNLFLALLTIFRAADS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03070			Bax inhibitor-1 family protein...		Potri.002G049000 [exp]	0	1
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	1.00	0.9875
AT2G15560			Putative endonuclease or glyco...		Potri.009G100600 [exp]	3.60	0.9706
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	4.47	0.9798
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	4.69	0.9836
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	5.19	0.9821
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	5.47	0.9784
AT5G49220			Protein of unknown function (D...		Potri.010G000700 [exp]	6.92	0.9708
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	7.74	0.9785	Pt-HSP17.13
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G076000 [exp]	9.16	0.9776
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	10.58	0.9764

Compare expression of checked genes

Potri.002G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.