Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63290 387 / 4e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G13400 83 / 3e-17 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076700 [exp] 77 / 3e-15 AT4G13400 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004080 [exp] 444 / 2e-153 AT3G63290 374 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10014705 [exp] 356 / 6e-121 AT3G63290 275 / 1e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033085 [exp] 76 / 8e-15 AT4G13400 560 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017737 [exp] 73 / 8e-14 AT4G13400 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G049300.1 pacid=42777609 polypeptide=Potri.002G049300.1.p locus=Potri.002G049300 ID=Potri.002G049300.1.v4.1 annot-version=v4.1 ATGGAAGAAGCGGGAGTGTTAGAATTGTACGAGCTGCACTACTCTGATTTGCTGCTGTTATCATCAACTTCACCGGTACCAGAAGAGGGAGAAGAAAGAG CGGAGAGAATAAAGAAAACAATAATGGAAACCCTAGGCCCGACTGGCCCTGGACTCCTTTCCATCACTGGTGTCCCTAAAGCTTCCATTCTTCGACAAAG GCTCCTCCCTCTTGCTAGCAAGCTGGCTCTTCTCGATCACGATCGCCGCAAACACATCCTCAAGGAGCACAACATGGGTAGTGATGTTCCTCTGAAGAAC CCGGATAGAAATGTGTCCTCTTTTGCAATGCAACTCAAATATGCTCAAGCTCTAGAATCTGCTCCGGGTAAAACGAATAATAGAGCCCGTTCTAATTCGA ATTTAGAATCAGCTCATCTGGATGACAATGATGATGAAGTGACAGACTCTCCGGAAGATGAATTTGCAAATCTGTCTGATATCTTTAGGGAGCTGGGATA TTGCATGATGGAGCTGGGGCTTCGTGTTGCGCAAATATGTGATATGGCCATTGGTGGTCAAGAGTTGGAACGGAGCTTACTGGAATCAGGGACAGCAAAA GGACGCCTTATACATTACCATTCTTCTCTAGACAACCTACTGATAAAAGCAAGTGGGAGAAGGAAGGGATCCACAAAAATGCAGGCTTATTGTGAGAAGA ACCAAGTGCTGTTATCAAGAAGTGAGCAAAAGCAATCAGAACGCTGTAACTTGGTTGCAAATGTTAATGAAGTCGGATCAAGTGGAAATCAGGGAAACCT ATGGCAGCAGTGGCATTATGATTATGGTATCTTCACTGTTTTGACAGCACCCATGTTTCTTCTGCCCTCCCAATTATCAGAAAATACCGCAACAGATCAA TTTCCAGTTTTTTGTGATAAAGACTGCCCTTGTCCAACTGGACATTCATATTTGCAAATCTTTGATGCCAATACAAATGATGTCCTCATGGTGAAAACTT CTTCAGAAAGTTTCATCATTCAGGTCGGTGAATCGGCTGATATCTTATCGAGAGGAAAGCTTCGCTCAACCCTTCATTGTGTTTGCAGACCCCCAAACTT AGAAAATCTAAGCAGAGAAACTTTTGTTGTGTTTTTGCAACCTGCATGGAGCAAAACTTTCTCAATGTCAGATTATAATGTGCAGCACAACATGTTAGGT CGTCATTCTTCAAATGAGGGAAATGGCCTTAGTGAGCATGACTTTAATGAAGTTGCTCGAGAAATTCATAAAATTGTCCCCCCACTTTCATCACGGTTGA AGGATGGGATGACATTCGCAGAATTCTCACGTGAAACTACCAAGCAATATTATGGAGGCAGCGGTTTACAATCAAACAGTTAG
AA sequence Show only first row Show all	>Potri.002G049300.1 pacid=42777609 polypeptide=Potri.002G049300.1.p locus=Potri.002G049300 ID=Potri.002G049300.1.v4.1 annot-version=v4.1 MEEAGVLELYELHYSDLLLLSSTSPVPEEGEERAERIKKTIMETLGPTGPGLLSITGVPKASILRQRLLPLASKLALLDHDRRKHILKEHNMGSDVPLKN PDRNVSSFAMQLKYAQALESAPGKTNNRARSNSNLESAHLDDNDDEVTDSPEDEFANLSDIFRELGYCMMELGLRVAQICDMAIGGQELERSLLESGTAK GRLIHYHSSLDNLLIKASGRRKGSTKMQAYCEKNQVLLSRSEQKQSERCNLVANVNEVGSSGNQGNLWQQWHYDYGIFTVLTAPMFLLPSQLSENTATDQ FPVFCDKDCPCPTGHSYLQIFDANTNDVLMVKTSSESFIIQVGESADILSRGKLRSTLHCVCRPPNLENLSRETFVVFLQPAWSKTFSMSDYNVQHNMLG RHSSNEGNGLSEHDFNEVAREIHKIVPPLSSRLKDGMTFAEFSRETTKQYYGGSGLQSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	0	1
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	4.47	0.8644
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	4.58	0.8171
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.010G159300 [exp]	6.92	0.8265	GRF12.1
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G080000 [exp]	7.68	0.7254
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	8.71	0.8364
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.011G166400 [exp]	10.58	0.7811	Pt-VCS.2
					Potri.006G273733 [exp]	15.16	0.7978
					Potri.006G276750 [exp]	18.54	0.8129
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075700 [exp]	19.74	0.7589
					Potri.003G089201 [exp]	19.89	0.7942

Compare expression of checked genes

Potri.002G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.