Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04810 659 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT3G63280 654 / 0 ATNEK4 NIMA-related kinase 4 (.1.2) AT1G54510 637 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT5G28290 599 / 0 ATNEK3 NIMA-related kinase 3 (.1) AT3G44200 419 / 3e-135 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 393 / 6e-132 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 305 / 6e-96 ATNEK7 NIMA-related kinase 7 (.1.2) AT4G29810 132 / 1e-33 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT1G50240 135 / 5e-33 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G53930 134 / 9e-33 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G051600 [exp] 767 / 0 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 748 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.016G051900 [exp] 415 / 2e-137 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 414 / 6e-137 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 414 / 1e-133 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 412 / 2e-132 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 399 / 2e-132 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 395 / 6e-131 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 135 / 5e-33 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042632 [exp] 716 / 0 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10009186 [exp] 695 / 0 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 687 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001783 [exp] 645 / 0 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 633 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 409 / 1e-131 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 409 / 1e-131 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 391 / 2e-128 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 385 / 1e-122 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 350 / 9e-115 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.002G049400.2 pacid=42778921 polypeptide=Potri.002G049400.2.p locus=Potri.002G049400 ID=Potri.002G049400.2.v4.1 annot-version=v4.1 ATGGAGCAGTATGAAATTCTGGAGCAGATTGGGAAAGGTTCCTTTGGCTCAGCTCTTCTTGTGAGGCATAAACATGAAAAAAAGAAATATGTGCTGAAGA AAATTCGTCTTGCTCGTCAGACTGATAGAACTCGCAGGTCTGCCTACCAGGAGATGGAGCTTATTTCTAAAGCAAGCAACCCATTTATTGTGGAATACAA AGATTCCTGGGTAGAAAAGGGCTGCTATGTGTGCATCATTATAGGATACTGTGAGGGTGGAGACATGGCTGAAGCTATAAAAAAGGCCAGTGGTGTTCAT TTTCCTGAAGAGAAACTTTGCAAGTGGCTAGTTCAACTCCTGATGGCTCTTGATTACTTGCATGCTAACCACATTCTTCATCGTGATGTCAAATGTTCAA ATATATTTTTGACAAAAGATCAAGATATTCGACTAGGTGATTTTGGTCTTGCTAAAATGTTAACTTCAGATGACCTTGCTTCTTCTGTTGTGGGAACTCC CAGTTACATGTGCCCTGAGCTTCTTGCTGATATTCCCTATGGTTCCAAGTCAGATATTTGGTCTTTAGGATGCTGCATATACGAGATGGCAGCTCACAAG TCTGCATTTAAAGCTTTTGATATTCAAACACTGATTAACAAAATAAATAAGTCTATAGTGGCTCCTCTTCCTACTGTGTACTCTGGTCCATTACGAGGGC TGATTAAAAGCATGCTGCGAAAGAATCCAGAACTTCGACCAAGTGCTGCAGAGTTGCTTGGTCACCCACATCTTCAACCTTACCTTCTCAAGATTCATCT AAAGTTGAATAGCCCGAGACGGAATACTTTCCCTGTCGAATGGTCTGATTCCACCTTCGTAAAGAAAGCTAGTTTTCTGGATCCACAAGCTGTTCCCAGT TTTACTACCAGAGAAAAAAGGCGATCATTCAACAATGACAGGGCTTTGAATCCTAGTATATCAGGAACTGAACAAGACTCCCCCCATTCTTCTCAAAGAG ATCAGGAATCCCCAGCCCCAATTTATTTGAACCAAAGGTTCACTGAATTATCTGTCGGCGTTGTCCATGAAGAATTTGGTAATACAGCAGCAAAGTTTTC AACATATGCCAGAACCCCAAGATTGATGCCCTCAAAAATTTCTGCTACTCCTAGAAGGCAGTCAACACCATCCAAGATATCATATATTACTTCAAAGCGT GATTCGCTTCCAGTGTCATGTACTACAGTGAGCAAATCTTCCCATACTGCACGCAGAGCATCTCTTCCATTTCCAACGAGAGCTGCAGCTGCAGCTGCAG GAACCCAATATAAGGCCAGTCATGGTCTTCTTCATAGCATGGATTCTCCAAACGTTTCTGTGAATGCTCCACGAATTGACAAGATCGCAGAATTTCCATT AGCCTCTTCTGAAGATCCTTTGATTCCCATCCATGGAACATCAACTTCAGCACAATTCTCTTCATCACCCTACAGCGTGGACTGCTCAATCACAAAGGAC AAGTGTACAGTTCAGGTTCTAGAGAGAGCTGTATCCAAGCACCGTGTAACTGATGCTTGCCAGCGAATTGGAAGTGAATGCTCGGAGCATAATCCAACAA GTGGTGTTTCAAGCCGTTCATCTTCAGACTCTAGACAGCAGCGCCGGTTTGACACCTCGTCATACCAACAGCGTGCGGAGGCTTTAGAAGGATTGCTTGA GTTTAGTGCGCGCCTTTTGCAACAAGAACGGTTTGCAGAGCTTGGGGTGTTGTTAAAGCCATTTGGGCCCGAGAAGGTTTCTCCCAGGGAGACTGCCATT TGGTTGGCTAAGAGCTTCAAAGAAACTGCAGTCTAG
AA sequence Show only first row Show all	>Potri.002G049400.2 pacid=42778921 polypeptide=Potri.002G049400.2.p locus=Potri.002G049400 ID=Potri.002G049400.2.v4.1 annot-version=v4.1 MEQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAYQEMELISKASNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVH FPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHK SAFKAFDIQTLINKINKSIVAPLPTVYSGPLRGLIKSMLRKNPELRPSAAELLGHPHLQPYLLKIHLKLNSPRRNTFPVEWSDSTFVKKASFLDPQAVPS FTTREKRRSFNNDRALNPSISGTEQDSPHSSQRDQESPAPIYLNQRFTELSVGVVHEEFGNTAAKFSTYARTPRLMPSKISATPRRQSTPSKISYITSKR DSLPVSCTTVSKSSHTARRASLPFPTRAAAAAAGTQYKASHGLLHSMDSPNVSVNAPRIDKIAEFPLASSEDPLIPIHGTSTSAQFSSSPYSVDCSITKD KCTVQVLERAVSKHRVTDACQRIGSECSEHNPTSGVSSRSSSDSRQQRRFDTSSYQQRAEALEGLLEFSARLLQQERFAELGVLLKPFGPEKVSPRETAI WLAKSFKETAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.002G049400 [exp]	0	1
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.002G008800 [exp]	1.41	0.9089	HB1.3
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	2.82	0.8979
					Potri.001G026501 [exp]	3.00	0.8853
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.006G066600 [exp]	4.47	0.8471
AT3G15480			Protein of unknown function (D...		Potri.001G403500 [exp]	5.29	0.8413
AT5G59350			unknown protein		Potri.008G054400 [exp]	5.29	0.8852
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	5.91	0.8748
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	6.70	0.8405
AT1G16290			unknown protein		Potri.008G084100 [exp]	7.34	0.8623
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.011G058400 [exp]	8.36	0.8526

Compare expression of checked genes

Potri.002G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.