Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HMT1,SMTA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63250 513 / 0 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G22740 473 / 2e-168 HMT3 homocysteine S-methyltransferase 3 (.1) AT3G25900 351 / 6e-121 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213100 [exp] 617 / 0 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G083600 [exp] 490 / 1e-175 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.008G155900 [exp] 475 / 2e-169 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1) Potri.010G125200 [exp] 342 / 5e-117 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014686 [exp] 532 / 0 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10039356 [exp] 469 / 5e-167 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10006901 [exp] 441 / 1e-156 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10006602 [exp] 420 / 4e-148 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10041451 [exp] 350 / 4e-120 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10034320 [exp] 346 / 8e-119 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [poplar] [flax] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G049800.1 pacid=42777658 polypeptide=Potri.002G049800.1.p locus=Potri.002G049800 ID=Potri.002G049800.1.v4.1 annot-version=v4.1 ATGTCCCACCCAGCCGCCGAAACCTCGTCGTTTATGACCGATTTCCTCCGCCAATCAGGTGGCGTTGCCATTATCGACGGCGGTCTCGCGACGGAGCTCG AACGGCATGGGGCTGACCTCAACGATCCCCTCTGGAGCGCCAAATGTCTCCTTACTTCCCCTCACCTCGTCCGTGCGGTACACCTTGACTATCTTGAAGC TGGTGCAGATATTATCATCACAGCATCTTATCAGGCCACCATTCAGGGATTCGAGGCAAAAGGTTTTTCCAGAGAAGACAGCGAAGCCTTGCTCAGGAAA AGTGTGGAAATTGCTTGTGAGGCACGGGATATATATTATGGTAGATGCAGAGAAGGTTCTCCTGATGGAAGTGATGATGGTAGGGTTCTGAAACATCGAC CTATTTTAGTTGCAGCTTCCGTTGGAAGCTATGGAGCTTATTTAGCTGATGGATCTGAGTACAGTGGGAATTATGGTGATGCGATTACCCTTGAAACCTT GAAAGATTTTCATCGCAGAAGAGTACAGATCCTAGCAGAATCAGGTGCTGACCTCATAGCATTTGAAACAGTTCCAAATAAGGTAGAAGCTCAGGCATAT GCCGAGCTCTTGGAGGAAGAAGACATAAAGATCCCTGCATGGTTCTCTTTTAACTCTAAGGATGGCATTAATGTAGTCAGCGGTGACTCTTTGCTTGAAT GTGCCTCCATTGCCGAATCATGCAAGAATGCAGTTGCTGTGGGAATCAACTGCACGCCTCCTAGGTTTATTCATGAACTGATTCTGTCCATTAAGAAGGT GACTACAAAACCAATACTTATTTATCCCAACAGCGGTGAGAGTTACGATGGCGATCGAAAGGAATGGGTGCAAAATACTGGCATATCGGATCAAGATTTT GTATCATATGTAAACAAATGGTGTGAGATCGGGGCTGCTCTTGTTGGAGGCTGTTGTAGAACAACTCCTCATACTATCAGAGCCATATACAAGACTCTTC CCAATAGATCTGCTGCTCTATCCTCGCACTGA
AA sequence Show only first row Show all	>Potri.002G049800.1 pacid=42777658 polypeptide=Potri.002G049800.1.p locus=Potri.002G049800 ID=Potri.002G049800.1.v4.1 annot-version=v4.1 MSHPAAETSSFMTDFLRQSGGVAIIDGGLATELERHGADLNDPLWSAKCLLTSPHLVRAVHLDYLEAGADIIITASYQATIQGFEAKGFSREDSEALLRK SVEIACEARDIYYGRCREGSPDGSDDGRVLKHRPILVAASVGSYGAYLADGSEYSGNYGDAITLETLKDFHRRRVQILAESGADLIAFETVPNKVEAQAY AELLEEEDIKIPAWFSFNSKDGINVVSGDSLLECASIAESCKNAVAVGINCTPPRFIHELILSIKKVTTKPILIYPNSGESYDGDRKEWVQNTGISDQDF VSYVNKWCEIGAALVGGCCRTTPHTIRAIYKTLPNRSAALSSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	0	1	HMT1,SMTA.1
AT2G44300			Bifunctional inhibitor/lipid-t...		Potri.001G232000 [exp]	3.74	0.7285
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.004G174100 [exp]	4.47	0.6623	Pt-ERD7.1
AT2G37870			Bifunctional inhibitor/lipid-t...		Potri.008G141000 [exp]	5.19	0.6812
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.006G222200 [exp]	6.48	0.6192
AT1G49230			RING/U-box superfamily protein...		Potri.001G309600 [exp]	9.59	0.6667
AT5G53140			Protein phosphatase 2C family ...		Potri.015G019200 [exp]	21.00	0.5968
AT4G38350			Patched family protein (.1.2)		Potri.005G251800 [exp]	25.29	0.5638
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	29.10	0.6265
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	29.84	0.5689
AT1G52720			unknown protein		Potri.003G059900 [exp]	30.70	0.5886

Compare expression of checked genes

Potri.002G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.