Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26110 405 / 9e-146 Protein kinase superfamily protein (.1.2) AT5G66710 43 / 0.0001 Protein kinase superfamily protein (.1) AT4G28860 41 / 0.0005 CKL4 casein kinase I-like 4 (.1.2) AT4G28880 40 / 0.0005 CKL3 casein kinase I-like 3 (.1) AT5G01850 40 / 0.001 Protein kinase superfamily protein (.1) AT1G08120 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212800 [exp] 447 / 2e-162 AT5G26110 401 / 4e-144 Protein kinase superfamily protein (.1.2) Potri.008G009800 [exp] 41 / 0.0004 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.003G130000 [exp] 41 / 0.0005 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006903 [exp] 383 / 1e-136 AT5G26110 382 / 2e-136 Protein kinase superfamily protein (.1.2) Lus10014684 [exp] 385 / 5e-130 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10025154 [exp] 44 / 7e-05 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10025236 [exp] 42 / 0.0002 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G049900.11 pacid=42776975 polypeptide=Potri.002G049900.11.p locus=Potri.002G049900 ID=Potri.002G049900.11.v4.1 annot-version=v4.1 ATGGAGATAGATGCAGAGGTCAAAGATAGCTCCCTCATTCTGATCAAACAGGGAGCTGAAGCGAGGGTTTTTGAGTCAAGCTTTGTTGGGAGGAGGTCTA TTGTTAAGGAACGTTTCTCGAAGAAGTATAGGCATCCAACTTTGGATTCTAAACTTACTATCAAGCGTTTAAATGCGGAAGCCAGGTGTATGACGAAGGC GAGACGACTAGGGGTGTCTACTCCTGTGTTGTATGCTGTGGATCCTCTTCTGCACGCTCTAACATTTGAGTATGTTGAGGGTCCTTCTGTGAAAGATATC TTTCTTGAATTTGGGTTAAATGGCGTTGTGGAAGAACGATTGGATGACATCGCAATGCAAATTGGTGATTCAATTGGAAAACTACATGATGGTGGTCTTA TTCATGGTGACTTGACAACATCAAATATGCTAATTCGGACTGGTACCAATCAATTGGTACTGATTGATTTTGGCTTGAGCTTCACTTCAACCCTTCCTGA AGATAAAGCTGTTGATTTATATGTACTGGAACGAGCCTTACTTTCAATGCATTCTTCATGTGGGAATGTGATGGATCGCATACTGGCCGGGTACAGGAAG TCCTCAAAACAGTGGTCATCAACATTGAACAAGCTAGCTCAAGTTCGACAGAGAGGTCGGAAGCGCACCATGATTGGATAA
AA sequence Show only first row Show all	>Potri.002G049900.11 pacid=42776975 polypeptide=Potri.002G049900.11.p locus=Potri.002G049900 ID=Potri.002G049900.11.v4.1 annot-version=v4.1 MEIDAEVKDSSLILIKQGAEARVFESSFVGRRSIVKERFSKKYRHPTLDSKLTIKRLNAEARCMTKARRLGVSTPVLYAVDPLLHALTFEYVEGPSVKDI FLEFGLNGVVEERLDDIAMQIGDSIGKLHDGGLIHGDLTTSNMLIRTGTNQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAGYRK SSKQWSSTLNKLAQVRQRGRKRTMIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26110			Protein kinase superfamily pro...		Potri.002G049900 [exp]	0	1
AT4G34412			unknown protein		Potri.004G141400 [exp]	2.23	0.9125
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.019G133200 [exp]	5.09	0.8730
AT5G54180		PTAC15	plastid transcriptionally acti...		Potri.015G005200 [exp]	5.19	0.8889
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.015G104200 [exp]	5.74	0.8868
AT3G51140			Protein of unknown function (D...		Potri.007G015600 [exp]	10.48	0.8575
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076700 [exp]	10.72	0.8436	Pt-CYP89.3
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.010G208000 [exp]	13.07	0.8778
AT1G73470			unknown protein		Potri.015G033200 [exp]	13.96	0.8859
AT4G22720			Actin-like ATPase superfamily ...		Potri.017G029200 [exp]	14.69	0.9107
AT5G02710			unknown protein		Potri.006G215300 [exp]	15.74	0.9020

Compare expression of checked genes

Potri.002G049900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.