Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63240 786 / 0 DNAse I-like superfamily protein (.1) AT2G32010 783 / 0 CVL1 CVP2 like 1 (.1.2) AT1G05470 664 / 0 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 432 / 2e-146 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 388 / 2e-130 DNAse I-like superfamily protein (.1.2) AT2G37440 317 / 1e-103 DNAse I-like superfamily protein (.1.2) AT1G71710 286 / 2e-88 DNAse I-like superfamily protein (.1.2) AT4G18010 283 / 7e-88 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G01900 268 / 3e-84 DNAse I-like superfamily protein (.1) AT1G34120 269 / 1e-82 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212700 [exp] 1061 / 0 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 841 / 0 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 833 / 0 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.005G078000 [exp] 449 / 8e-153 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 445 / 6e-151 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 440 / 5e-150 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 416 / 6e-141 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.017G074200 [exp] 328 / 9e-107 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 295 / 5e-92 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006904 [exp] 817 / 0 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 779 / 0 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10014684 [exp] 731 / 0 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10042619 [exp] 699 / 0 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10006597 [exp] 503 / 1e-176 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10033398 [exp] 414 / 2e-139 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 410 / 2e-138 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 396 / 3e-133 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10003010 [exp] 389 / 1e-128 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10011041 [exp] 384 / 8e-127 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.002G050000.4 pacid=42780227 polypeptide=Potri.002G050000.4.p locus=Potri.002G050000 ID=Potri.002G050000.4.v4.1 annot-version=v4.1 ATGAGAGATGAGAACCCGAAAAAGAGCAAGCTTTCATGGCCTAAGACACTGGTCAAGAAGTGGTTCAATATCAAGAGCAAAGCTGAGGAATTTCAAGCTG ATGATGTCCTTTATGGAGGTGGTGGTGAGGATTGGAGGCGCAGCTTCTCAGAGAGAGAAGCATGCACCATCAAGAAAAGCAAAACAGAGAGATCGTCCAA GAGGCACTCTGATCGAGTTCAGCGAAGCAAAATAGACCTTGATGCTGCACAAGTTACAGATGTGAACCAATATAGGATATTTGTAGCAACATGGAATGTA GCTGGAAAATCTCCTCCAAGTCATTTGAACCTTGAGGATTGGCTTCACACTTCACCCCCTGCTGATATTTATGTTCTTGGGTTTCAAGAAATTGTGCCTT TGAATGCTGGAAATGTTTTGGGCACAGAAGACAATGGACCGGCCAAAAAATGGCTAGCTCTTATTAGAAAAACTCTAAATAGTCTTCCTGGCACCAGTTG TGGTTACCATACTCCTTCACCAATCTCTGATCCCATTGTAGAATTGGATGCAGACTTTGAGGGATCAACGAGGCAGAAAGCCTCATCATTCTTCCATCGC CGTTCCTTTCAGTCCCTGAGCCGCAGCATGAGAATGGATGGTGACATGGAGATGGCACAACCTAGACTTGATCGACGTTTTAGTGTCTGTGACAGGGTTA TCTTTGGGAATAGACCAAGTGATTATGATCCTAATTTCAAATGGGGTTCCTCTGATGATGAGAACGGACCAGGGGATTCACCAGGTGCTACTCAATACGC ACCTATTGAGTACAGTGGATCCTTGTCAATGGAGGATAGAGAAAGACAAACAGGTCAGTCAAGATACTGTTTGGTGGCCAGTAAACAAATGGTTGGGATA TTTCTAACAGTATGGGTAAAGAGCGATCTCAGAGATGACATTCGCAACCTCAAAGTGTCTTGTGTGGGCAGAGGATTGATGGGATATCTTGGAAACAAGG GCTCAATTTCAATTAGCATGTCATTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACATCTGGGCAGAAGGAGGGAGACGAGCTGCGAAGAAA CTCTGACGTTATGGAGATCCTTAGGAAGACTAGGTTTCCTAGAGTTCATGATAGGGGAGACAAATACTCCCCTCAAACAATTTTAGAGCATGATCGAATT ATTTGGGTAGGTGATTTGAATTACCGGGTTGCCTTGTCTTATTATGCTGTGAAAACGCTTGTTGAGATGCACAACTGGAGAGCATTGTTAGAGAATGACC AGCTTCGGATAGAGCAGAGACGAGGGCGGGTCTTTGATGGATGGAGTGAAGGGAGGATTTATTTCCCTCCTACATACAAGTATTCCAATAACTCAGATAG ATATGCAGGGGATGATAGGCACCTAAAGGAGAAACGTAGAACTCCTGCATGGTGTGATCGTATACTGTGGTATGGAAAGGGCCTCCATCAGTTATCTTAT GTACGTGGGGAGTCAAGGTTCTCAGATCACAGACCAGTTTATGGTGTATTTTTGGCTGAGGTTGAATCTATAAATCGTGGCCGAATCAAGAGAAGCACGA GTTGTTCCAATTCTAGAATTGAGGTAGAAGAGCTGTTGCCATACTCACATGGATACACCGAACTCAGTTTCTTTTGA
AA sequence Show only first row Show all	>Potri.002G050000.4 pacid=42780227 polypeptide=Potri.002G050000.4.p locus=Potri.002G050000 ID=Potri.002G050000.4.v4.1 annot-version=v4.1 MRDENPKKSKLSWPKTLVKKWFNIKSKAEEFQADDVLYGGGGEDWRRSFSEREACTIKKSKTERSSKRHSDRVQRSKIDLDAAQVTDVNQYRIFVATWNV AGKSPPSHLNLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPAKKWLALIRKTLNSLPGTSCGYHTPSPISDPIVELDADFEGSTRQKASSFFHR RSFQSLSRSMRMDGDMEMAQPRLDRRFSVCDRVIFGNRPSDYDPNFKWGSSDDENGPGDSPGATQYAPIEYSGSLSMEDRERQTGQSRYCLVASKQMVGI FLTVWVKSDLRDDIRNLKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVHDRGDKYSPQTILEHDRI IWVGDLNYRVALSYYAVKTLVEMHNWRALLENDQLRIEQRRGRVFDGWSEGRIYFPPTYKYSNNSDRYAGDDRHLKEKRRTPAWCDRILWYGKGLHQLSY VRGESRFSDHRPVYGVFLAEVESINRGRIKRSTSCSNSRIEVEELLPYSHGYTELSFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63240			DNAse I-like superfamily prote...		Potri.002G050000 [exp]	0	1
AT5G52270			SNARE-like superfamily protein...		Potri.012G140600 [exp]	4.47	0.8677
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G121500 [exp]	6.63	0.8443
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	7.87	0.8820
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	9.38	0.8586
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	15.16	0.8433
AT2G32280			Protein of unknown function (D...		Potri.007G119600 [exp]	15.23	0.8166
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G075400 [exp]	16.52	0.8535
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	17.02	0.8619
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	19.74	0.8312
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	20.49	0.8594

Compare expression of checked genes

Potri.002G050000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.