Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63220 535 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 125 / 1e-32 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 107 / 4e-26 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 102 / 6e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 98 / 1e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 95 / 1e-21 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 91 / 2e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 89 / 1e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 88 / 5e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 87 / 7e-19 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211700 [exp] 667 / 0 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 138 / 1e-37 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 120 / 1e-30 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 117 / 1e-29 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 112 / 4e-28 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G217700 [exp] 100 / 2e-23 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 97 / 2e-22 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 94 / 4e-21 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 91 / 1e-20 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022061 [exp] 566 / 0 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10042607 [exp] 327 / 4e-112 AT3G63220 298 / 1e-100 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013899 [exp] 140 / 3e-37 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 133 / 2e-35 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 105 / 7e-25 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 102 / 4e-24 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 100 / 6e-23 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 96 / 8e-22 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 94 / 3e-21 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 94 / 4e-21 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.002G050600.3 pacid=42777625 polypeptide=Potri.002G050600.3.p locus=Potri.002G050600 ID=Potri.002G050600.3.v4.1 annot-version=v4.1 ATGTCTGAACTGATTGAAGGTCTTCCAGACGCTGTTGCCATCAGGTGCATTGCACGGGTTCCCTTCTACCTCCATCCCAAGTTAGAGGTTGTTTCTCGTT CATGGCAAGCTGCTGTGCGTAGCACTGAGCTGTTTAAAGCCCGGCAGGAGGTTGGTTCAGCTGAGGATCTGCTATGCGTGTGTGCCTTCGATCCTGAGAA TTTGTGGCAGCTTTATGACCCTCTCCGAGACCTTTGGATAACCCTTCCTATTCTCCCTTCTAAGATCAGGCACCTTGCGCACTTTGGTGTTGTCTGTAGT GCAGGAAAGCTATTTGTGCTTGGTGGTGGTAGTGATGCTGTTGACCCATTAACTGGTGATCAAGATGGAAGCTTTGCAACAAATGAAGTCTGGTCATATG ATCCTGTATTACGAGAATGGGCAGCACGTGCATCTATGCTGGTGCCCCGAGCAATGTTTGCATGCTGTGCTTTGAATGGAAAAATTGTTGTTGCTGGTGG TTTCACCAGCTGCCAAAAATCAATTTCTCAAGCAGAAATGTATGATCCAGAGAAGGATGTTTGGGTCCCGATACCTGATCTCCATCGAACTCACAATTCT GCATGCTCTGGAGTAGTTATCGGGGGGAAGTTGCATGTCTTGCATAGGGGCTTGTCAACAGTACAAGTTTTGGACAGTATAGGGTCTGGGTGGACCGTTG AGGATTATGGTTGGCTCCAAGGTCCAATGGCAGTTGTTCATGATGCTCTTTATGTGATGAGCCATGGACTAATTGTCAAGCAGGAAGGGAAAACCAGGAA AGTGGTAGTTTCAGCATCTGAATTCCGGAAAAGGATTGGATTTGCAATGACAGGGTTAGGAGATGAGATGTATGTGATTGGAGGGGTGATTGGCCCTGAT CGATGGAATTGGGATATCAAGCCAGTGTCTGATGTTGATATCTTGACAGTTGGGGGTGAAAGACCAACATGGCGCCAGGCAACTCCAATGACACGGTGCC GAGGAACAATCCGTGGTTGTGCACAGCTAAGAATTTAA
AA sequence Show only first row Show all	>Potri.002G050600.3 pacid=42777625 polypeptide=Potri.002G050600.3.p locus=Potri.002G050600 ID=Potri.002G050600.3.v4.1 annot-version=v4.1 MSELIEGLPDAVAIRCIARVPFYLHPKLEVVSRSWQAAVRSTELFKARQEVGSAEDLLCVCAFDPENLWQLYDPLRDLWITLPILPSKIRHLAHFGVVCS AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVLREWAARASMLVPRAMFACCALNGKIVVAGGFTSCQKSISQAEMYDPEKDVWVPIPDLHRTHNS ACSGVVIGGKLHVLHRGLSTVQVLDSIGSGWTVEDYGWLQGPMAVVHDALYVMSHGLIVKQEGKTRKVVVSASEFRKRIGFAMTGLGDEMYVIGGVIGPD RWNWDIKPVSDVDILTVGGERPTWRQATPMTRCRGTIRGCAQLRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63220			Galactose oxidase/kelch repeat...		Potri.002G050600 [exp]	0	1
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	8.71	0.6773
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	10.00	0.6351
AT2G15220			Plant basic secretory protein ...		Potri.001G299600 [exp]	11.74	0.6270
AT1G24330			ARM repeat superfamily protein...		Potri.010G058000 [exp]	13.74	0.5751
AT5G05800			unknown protein		Potri.006G116400 [exp]	14.42	0.6223
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.010G078400 [exp]	18.46	0.6134
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.001G273000 [exp]	22.44	0.5851
AT4G27450			Aluminium induced protein with...		Potri.011G122100 [exp]	41.42	0.5637
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147601 [exp]	56.86	0.5843
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	57.70	0.5936

Compare expression of checked genes

Potri.002G050600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.