Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) AT3G63210 164 / 3e-49 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT5G11460 98 / 3e-23 Protein of unknown function (DUF581) (.1) AT2G25690 83 / 4e-18 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT1G74940 64 / 8e-12 Protein of unknown function (DUF581) (.1) AT4G39795 58 / 2e-10 Protein of unknown function (DUF581) (.1) AT1G53903 57 / 3e-10 Protein of unknown function (DUF581) (.1) AT1G53885 57 / 3e-10 Protein of unknown function (DUF581) (.1) AT5G20700 57 / 1e-09 Protein of unknown function (DUF581) (.1) AT1G22160 56 / 1e-09 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211500 [exp] 459 / 7e-165 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 243 / 5e-79 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 236 / 7e-77 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 114 / 4e-29 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 109 / 3e-27 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 100 / 4e-24 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 66 / 2e-12 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 59 / 2e-10 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 58 / 4e-10 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042606 [exp] 223 / 6e-72 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 218 / 4e-70 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 180 / 5e-55 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 176 / 1e-53 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 99 / 4e-23 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 56 / 2e-09 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 56 / 3e-09 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10035894 [exp] 56 / 6e-09 AT3G22550 98 / 1e-23 Protein of unknown function (DUF581) (.1) Lus10025770 [exp] 56 / 8e-09 AT3G22550 100 / 2e-24 Protein of unknown function (DUF581) (.1) Lus10022948 [exp] 52 / 9e-08 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.002G050800.1 pacid=42779246 polypeptide=Potri.002G050800.1.p locus=Potri.002G050800 ID=Potri.002G050800.1.v4.1 annot-version=v4.1 ATGCTGAGGAATAGATCTAGAGCTGTGACCAGCAAGCAAACTTTAATGACTGATCACAATAGTGCTCAATCAACTTCCAATCAGAATTGCACAAAGCCAA CAACATCTTTTCTCGTTTCTCCAAGGTTCAAAGCTTTCACCTTTAAGGGTCTCCCTGAAGCTGAACCCGTGATGAGTCCAACTTCAATTCTTGACACTAC TAAACCATTCTTCCCTTTCAAAACCCCCTTTTCTAATGTCATAAACCAACCTAAATCCCCTAAAGTTTTCTCAGAGTACAAACACTCATGGGACAAATCA GACTCAAAGGGCATTGGTCTTGCACTTATTGATGATACACCAAGCTGTGGCAAAGTATCCATCAAAGAGAACGAAAACCATTTTTCTAAACCCAGTAACA GAACGGTCTTGTTTGGCACCAAGCTCAGAGTTCAAATCCCACCACAGCCAAATTCTATACTATTTCCAGTCGAGTCACCTAAATCTCCAGGCGACTTTGG AATTGAGACCTCCAGGAACTCACAATTCTCTGCATCTCCTTCAGTCCATTCTGGCATCCAATCAAAGGATTCTCCTCGGGTGTTCACGGGATGCATATCA ATTAGTGAAATGGAGCTCTCTGAAGACTATACATGTGTCATAACTCATGGGCCTAATCCAACGACCACTCATATTTTTGATAACTGCGTTGTGGAGAATT GTTACTCTTTATCGGATATGTCCAAATCTGAGCCCAGGAGTTTCCTTAGCTCCTGTTACACTTGCAAGAAGAATCTTCAACAGAAAAATGACATTTACAT CTACAGAGGTGAAAAAGCTTTCTGCAGTCAGGAATGCCGTTACCAAGAAATGTTATTAGATGAAATAGAGACTTGA
AA sequence Show only first row Show all	>Potri.002G050800.1 pacid=42779246 polypeptide=Potri.002G050800.1.p locus=Potri.002G050800 ID=Potri.002G050800.1.v4.1 annot-version=v4.1 MLRNRSRAVTSKQTLMTDHNSAQSTSNQNCTKPTTSFLVSPRFKAFTFKGLPEAEPVMSPTSILDTTKPFFPFKTPFSNVINQPKSPKVFSEYKHSWDKS DSKGIGLALIDDTPSCGKVSIKENENHFSKPSNRTVLFGTKLRVQIPPQPNSILFPVESPKSPGDFGIETSRNSQFSASPSVHSGIQSKDSPRVFTGCIS ISEMELSEDYTCVITHGPNPTTTHIFDNCVVENCYSLSDMSKSEPRSFLSSCYTCKKNLQQKNDIYIYRGEKAFCSQECRYQEMLLDEIET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	0	1
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.001G010500 [exp]	1.00	0.8438
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	4.24	0.8420
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	10.95	0.8011
AT2G46690			SAUR-like auxin-responsive pro...		Potri.002G176400 [exp]	11.35	0.8105
AT2G44130			Galactose oxidase/kelch repeat...		Potri.003G218400 [exp]	13.41	0.7772
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Potri.006G013900 [exp]	16.49	0.7799
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.002G059100 [exp]	17.14	0.7204
AT3G55410			2-oxoglutarate dehydrogenase, ...		Potri.008G051600 [exp]	20.12	0.7784
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.001G167100 [exp]	21.21	0.7991	ALDH7.1
AT4G14450		ATBET12	unknown protein		Potri.008G164801 [exp]	22.60	0.7905

Compare expression of checked genes

Potri.002G050800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.