Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22530 126 / 4e-37 unknown protein AT4G14830 119 / 9e-35 HSP1 heat shock protein 20-like protein 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G154100 [exp] 140 / 1e-42 AT3G22530 140 / 2e-42 unknown protein Potri.010G086400 [exp] 141 / 3e-42 AT3G22530 165 / 3e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010549 [exp] 131 / 6e-39 AT3G22530 164 / 1e-51 unknown protein Lus10004901 [exp] 131 / 3e-38 AT3G22530 167 / 9e-52 unknown protein Lus10000009 [exp] 53 / 2e-09 AT3G22530 59 / 6e-14 unknown protein Lus10035239 [exp] 53 / 2e-09 AT3G22530 59 / 6e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G051100.1 pacid=42779873 polypeptide=Potri.002G051100.1.p locus=Potri.002G051100 ID=Potri.002G051100.1.v4.1 annot-version=v4.1 ATGAAGGTCCACCCAACTCCAAAGAAGAGAAGCATTACCACCACCCAATACAACGATGCTTCTCGCACCCACACCCCAAACGCAAAGAAGCTAAAAAGAC TCCCTCACGTATTTGCTAGAGTACTGGAACTTCCATTCCACTCAGATACTGACGTTTTGGTCCAAGAAACTCCAGATTCTTTCCGTTTCGTGGCAAACAG TGAGAACATAACCATTCCCGATGATTATCAAGCCCGCGTAGTTGAGATATTTCCAGGGCTGACAAAGATCGTGGTAATTAAAGAAACAGACAGCGGTGAT CATTATCCTTCCATGGATGAACTTGAAATCGACACGTGGAGGTGTCGGCTCCCGGCCACGGTGCGCCCGGAGATGGCGAGTGCAAGGTGTATTGAAGGAC AGTTGGTTGTTACTGTTCCAAAGACCCTGAATTTGGAGAATTTTGCTGGTGGGCAAAATGTTGATGACGAAGCAAATATAAGTTGGCTTGATGGATTGCT TTGA
AA sequence Show only first row Show all	>Potri.002G051100.1 pacid=42779873 polypeptide=Potri.002G051100.1.p locus=Potri.002G051100 ID=Potri.002G051100.1.v4.1 annot-version=v4.1 MKVHPTPKKRSITTTQYNDASRTHTPNAKKLKRLPHVFARVLELPFHSDTDVLVQETPDSFRFVANSENITIPDDYQARVVEIFPGLTKIVVIKETDSGD HYPSMDELEIDTWRCRLPATVRPEMASARCIEGQLVVTVPKTLNLENFAGGQNVDDEANISWLDGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22530			unknown protein		Potri.002G051100 [exp]	0	1
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.007G146000 [exp]	12.48	0.8413
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.018G089100 [exp]	15.39	0.8620
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.018G089400 [exp]	20.34	0.8576
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.012G145600 [exp]	50.79	0.8287
AT2G28080			UDP-Glycosyltransferase superf...		Potri.004G214100 [exp]	54.33	0.7757
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	57.34	0.8317
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147602 [exp]	60.82	0.8262
AT4G23950			Galactose-binding protein (.1....		Potri.003G141500 [exp]	66.45	0.8249
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Potri.010G114200 [exp]	71.76	0.7676
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.016G053000 [exp]	85.78	0.7634

Compare expression of checked genes

Potri.002G051100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.