Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36740 627 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 585 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G05380 541 / 1e-170 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G14920 491 / 7e-152 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G14980 352 / 3e-101 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 233 / 2e-62 PHD finger transcription factor, putative (.1) AT2G37520 142 / 4e-34 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 138 / 6e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G63900 132 / 9e-32 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 119 / 6e-27 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211100 [exp] 1880 / 0 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 599 / 0 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 575 / 2e-180 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 366 / 4e-105 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 340 / 2e-102 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.009G072600 [exp] 270 / 8e-74 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 244 / 9e-67 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G083600 [exp] 149 / 2e-36 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 135 / 6e-32 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042602 [exp] 768 / 0 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 621 / 0 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 521 / 4e-161 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10006110 [exp] 517 / 9e-159 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 234 / 7e-62 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 234 / 7e-62 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10018681 [exp] 221 / 2e-59 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 218 / 2e-58 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10022055 [exp] 200 / 1e-54 AT5G36740 154 / 7e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10012522 [exp] 197 / 9e-53 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G051400.3 pacid=42778422 polypeptide=Potri.002G051400.3.p locus=Potri.002G051400 ID=Potri.002G051400.3.v4.1 annot-version=v4.1 ATGAGAGAAGGGTTGAGATCTAGTGTTAATTTATTGCGGAAATCGGTGAAAAATGAGGTTTCTCCGAGTGAATTGACTGACGAGGAGAAACCGAAATTGA ATCAAGATGAGGCGTTAAGAGAAGACATGGAAGTGGATCAGAGAGATGGGTTAAAAATTGAAGAATGTGAAGGAGGGAGTGATGCGGGGGAGTGTAATGC TGCTGAGACTAGTAAAAGTAGAAGGAAAAGAAGTAGAGTTGCTAGCGAGGGAGAGAGCGAGGATGGTAGCTCGCTCAAGGGCAAGAGTGGTGACGGGTCT GAGAAGAGATTGGCTGAGGTGAAAAAGAAAGACAGTGAGGCCTGTGATCACGAGGAGGGGAAAACATTAAAGCGCAAGCGTGGGAGGCCTCCCAAGGCTC AGAAGAGTGATGGGTCTGAGAAGACAAGGATCAAGGCGGTAAAGGAAGAAAGCAATCAATATGTCGGTAAAGAGAGTGAACAGCCAGATAATGAAGTGAG GGAAAACTTAAAGCCTAAGCGTGGGACACCCCCCAAGGTTCAGAAGAATGACGTGTCTGAGAAGAAAAGGGCCGGGGTGGAAAGGGAAGAGGGAAATCAT TATGTTGGCGAAGAGAGTGATCGATCAGATGATGGGGCAAGTAGAAGATTAAAGCATAAGCGTGGAAGGTTCCCCAAGGCTCATAAGAGTCACAGGTCTG GGAAGAAAAGAGGCAAGGCAGGTAAAGAAGGTAGTGATCTATCTGCTGGTGAAGAGAGTGAACAGTCAGATAATGAGGTGAGTGAAAAATCAAAGCCTAA GCGCGGGAGACCCCCCAAGGCTAAGAAGAGTGACAAGCCTGAGAAGAACATTGAGGCGGTTGAGGATGACACTGCAGAATCATCTGGTGAAGAGAGTGAT GAATCTTATGGAAAAGTGGGGATGAGGTTGAAGCCTAAGCGTGGGAGACACAGCAAGTTGAACAAGGGCATAAAGGTGGGCGGGCCGAGGAAAAGACAGT TGGGAAAAAAGACAAGACATAATAAGAACCACAATGTGGGAGCTAGAAGTGCGTTATCTGGAGGGAAAAAATCTAATGCAACGGAGTTAGCAACAGCTAG GAAGATCAAATTCATTAAAGATGAAAAGGAAGAGGGGAGAAATAAACAGAAGGCTGTAGTGAGAGATAAAATTATAGAACTTCTTTTGGGTGCAGGCTGG ACAATCGAGCATAGACCTAGGAATGGTAGAGATTACTGCGATGCTGTGTATGTTAATCCTGAAGGAAGGACCCACTGGTCTGTCACCTTGGCTTACCGGA TTCTTAAGCAGCATTATGAAGGTGGCGGTGGTGATTCAAATACTTGTAAGACTGGTTTCAAGTTTACTCCTCTACCAGATGATGAACTCAGCATACTAAC AAAAATAATAGGCAAGGAAAGGAGTGATAAAAATAAAAAGAAAAAGAAATGGAAGCAAGGTGAGGGTGAGAAAACGGGTGAAGGAGTTGCAAAACTGAAA AATAAGAAAGGAAAACTGCACAAGAGAAAACTGGATGCTGCGGCAACTCCTGGCCGTAAGAAGCTGAAGGACAGGACAAAACATAAATATTCTCTCTCCG AACAGGATGACTGTTCTGGTACATCAGACGACAGAACAGCAGTCAAGGATCGTAAGCAACTCAAAACACATAATAGAAAGCGGTGTGCTCTAATGATTCG CAATTCTAAGGAGGGTGCAGATTCAAATGGTGATGGATATGTGCTGTATAATGGGAAGCGAACTGTACTTGCCTGGATGATTGATTTGGGCTCTGTGCCA TTAGATGGAAAGGTGCAGTACTTGAAACGCAGGAAGACACGGACAGTGCTCAAGGGTAAAATCACAACAGATGGCATTCAGTGTGATTGCTGTGGTGAAA CTTTTGCAATCTTAGACTTTGAGTCTCATGCAGGCAGCAAATCCTGCCAGCCACTCAAAAACATATGTTTAGAGAACGGACATTCACTCTTGCAATGCCA GCTAGAGTCATGGAACAAACAAGACGAGTCTGATCGTAAAGGGTTCCATTTTGTTGATACTGATGATCAAGATCCAAATGATGATACATGTGGGATTTGT GGAGATGGTGGAAACCTGATTTGCTGTGATAGTTGCCCATCAACATTCCATCAAAGCTGCCTAGAGATAAAGAAGTTCCCTTCAGGTGTCTGGAATTGCA CGTATTGTTCATGCAAATTTTGTGGGATGGCTGGTGGGGATACATGTCAGATGGACGAAAATGATACTGCTGCCCAACCCGCATTATTGGCATGTTGCTT GTGTGAGGAAAAATACCACCACTCTTGTATTCTTGCCGAGAACACTGTAAATGATGGTTACAGCAGTGTATCCTTCTGTGGGAAAAAATGCCAAGAGTTA TATGATAAACTACAGGCACTTCTTGGGGTTAAACATGAAATGGAAGAAGGCTTTGCGTGGACTCTTGTTCGCAGATTTGATGTTGGCTCTGATATTTCTC TTAGTGGAATGCATCGGAAAGTTGAATGTAATTCCAAGGTAGCTGTTGCGTTGCACATAATGGATGAGTGCTTTTTGCCCATGCCTGACCATAGAAGTGG GGTCAATCTGATTCGTAATATTGTATATAATTTTGGGTCGAACTTCAATCGACTGAACTACAGTGGTTTTCTGACTGCAATTTTAGAGCGAGGGGATGAA ATAATCTCGGCTGCATCTATTAGGATCCATGGGAACCATTTAGCAGAGATGCCATTCATTGGGACCCGCCACATGTATAGGCGTCAAGGAATGTGCCGCC GGCTTCTAAGTGCAATTGAAACTGCACTCTGCTCCCTAAATGTCGAGAAATTGGTCATACCGGCGATCTCTGAGCTAAGGGAAACCTGGACTTCTGTTTT TGGTTTTAAGCCACTTGAAGGATCGAGCAAGCAGAAAATGAGGAACATGAAAATGGTGGCATTCCCTGGCATTGATATGTTACAAAAACCATTGTTGAAG CATCATCAGTTTGCTGAAGCAAATATGGTTTCCACTGAAGGCTCCATGGAACTAAAGGAACATCATACCATGGATGAGACATCAAGTAATTCTGATGAGA AATGTTCACCAGTGAGATTTGATTTGAAAGTTTCCACTGAAACTAGTGCACCTCATACTGGCAAAATAAATGATCAAGCTGCTGCAGTTGAATCTGGCTC CATGGCTGATTGCCTGAATGATACTTCTGACATTACAAGTGAAAATGCTACCCTATCCACTTGTCCCAAGGAAAAAACGGGTGGTCGATTGAGTGTTGTT CCTGATAATCTGAAGGGGAGAGACAAAAATACTTTGAAGACTCCTGATTATATGGGTGATGCTAATGAACAAACTAGAGAGGTGGCTGAACATCAGGGTA CTGTTTCTGGTTTCATTGCCCCCTCCGATGGTAAGAGGAAGGTGAAAGGGGATGCACATGTGAACCAGAGTGGTGTTTCTGAGGTTGAAAGCAAACTGTC TGGCATATCTTTTATGGGGTCTGAAGCTGCTGACTTTCAAGGACAATGTCAGTTAGCTTCCAAGGAGGATACAGAGAATGTTCCTTGTGAAGTGAAAGTT GAAGATAGCAGTGATAGACAGAACCGCAATTCTGTGCATACCTCCTCTGAGATCATAACAAGTCAACCCCGGCACTTGGTTTCCGAGCTTGAACTTGAAG TTTCAGGTACCAATGCTGCTCATCATGAGTCTACCACCTGCAATATTTCCGGTGATGTAGCTCAATCAACAACCACACCACTTCCTCAGAAAGTGCAAGA TGATGGTAATGATCATTGTGGTGTATTGCCTGGCAACCAAAATATTAGTTCTTGTCAGGTTAAGGAGCCTATTTCCAAGGAAATGGTTGTCCTTGCTACC GCTGATCCTAATTCTGATGTCACTGCTAAACGTGATCTACAATCTTGCAGAAGCAATGGATTTTGCTTTGCCACAGAGCTCGGAGTGAGCTCTTGTGGAG TTGATGTAGATAGAGTCCATGACCTCAAAGAAGTATCGGACACAGTTCAAAGTGATGCTATTTCTCCTTATGGAGGTTCTATTTCTGATGGGCCTCGGAT GAATATCAAATCTTCAGAGCACGCCAATTCTGTTTCTGAGGTTGAGCCTGCTAGTTTGACAGGGGGCATCTCCGAACCTTTATGTAATTCAAGCTCTGCT CGCCTGCACTGTGCCTCTGGTGGTGGTAATTCCTGCGGTGCACCTGAGGTGATAATTTTGTCAAACCAGGCTAGTTGA
AA sequence Show only first row Show all	>Potri.002G051400.3 pacid=42778422 polypeptide=Potri.002G051400.3.p locus=Potri.002G051400 ID=Potri.002G051400.3.v4.1 annot-version=v4.1 MREGLRSSVNLLRKSVKNEVSPSELTDEEKPKLNQDEALREDMEVDQRDGLKIEECEGGSDAGECNAAETSKSRRKRSRVASEGESEDGSSLKGKSGDGS EKRLAEVKKKDSEACDHEEGKTLKRKRGRPPKAQKSDGSEKTRIKAVKEESNQYVGKESEQPDNEVRENLKPKRGTPPKVQKNDVSEKKRAGVEREEGNH YVGEESDRSDDGASRRLKHKRGRFPKAHKSHRSGKKRGKAGKEGSDLSAGEESEQSDNEVSEKSKPKRGRPPKAKKSDKPEKNIEAVEDDTAESSGEESD ESYGKVGMRLKPKRGRHSKLNKGIKVGGPRKRQLGKKTRHNKNHNVGARSALSGGKKSNATELATARKIKFIKDEKEEGRNKQKAVVRDKIIELLLGAGW TIEHRPRNGRDYCDAVYVNPEGRTHWSVTLAYRILKQHYEGGGGDSNTCKTGFKFTPLPDDELSILTKIIGKERSDKNKKKKKWKQGEGEKTGEGVAKLK NKKGKLHKRKLDAAATPGRKKLKDRTKHKYSLSEQDDCSGTSDDRTAVKDRKQLKTHNRKRCALMIRNSKEGADSNGDGYVLYNGKRTVLAWMIDLGSVP LDGKVQYLKRRKTRTVLKGKITTDGIQCDCCGETFAILDFESHAGSKSCQPLKNICLENGHSLLQCQLESWNKQDESDRKGFHFVDTDDQDPNDDTCGIC GDGGNLICCDSCPSTFHQSCLEIKKFPSGVWNCTYCSCKFCGMAGGDTCQMDENDTAAQPALLACCLCEEKYHHSCILAENTVNDGYSSVSFCGKKCQEL YDKLQALLGVKHEMEEGFAWTLVRRFDVGSDISLSGMHRKVECNSKVAVALHIMDECFLPMPDHRSGVNLIRNIVYNFGSNFNRLNYSGFLTAILERGDE IISAASIRIHGNHLAEMPFIGTRHMYRRQGMCRRLLSAIETALCSLNVEKLVIPAISELRETWTSVFGFKPLEGSSKQKMRNMKMVAFPGIDMLQKPLLK HHQFAEANMVSTEGSMELKEHHTMDETSSNSDEKCSPVRFDLKVSTETSAPHTGKINDQAAAVESGSMADCLNDTSDITSENATLSTCPKEKTGGRLSVV PDNLKGRDKNTLKTPDYMGDANEQTREVAEHQGTVSGFIAPSDGKRKVKGDAHVNQSGVSEVESKLSGISFMGSEAADFQGQCQLASKEDTENVPCEVKV EDSSDRQNRNSVHTSSEIITSQPRHLVSELELEVSGTNAAHHESTTCNISGDVAQSTTTPLPQKVQDDGNDHCGVLPGNQNISSCQVKEPISKEMVVLAT ADPNSDVTAKRDLQSCRSNGFCFATELGVSSCGVDVDRVHDLKEVSDTVQSDAISPYGGSISDGPRMNIKSSEHANSVSEVEPASLTGGISEPLCNSSSA RLHCASGGGNSCGAPEVIILSNQAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	0	1
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.005G211100 [exp]	1.41	0.9548
AT3G54500			unknown protein		Potri.003G200300 [exp]	4.00	0.9367
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G120700 [exp]	5.19	0.9258
AT1G76810			eukaryotic translation initiat...		Potri.019G103600 [exp]	6.32	0.9320
AT5G43490			unknown protein		Potri.017G058600 [exp]	8.36	0.9307
AT4G26630			DEK domain-containing chromati...		Potri.011G093200 [exp]	9.00	0.9160
AT1G80870			Protein kinase superfamily pro...		Potri.003G183100 [exp]	9.05	0.9075
AT5G43490			unknown protein		Potri.001G319500 [exp]	9.16	0.9472
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.007G022600 [exp]	11.22	0.9073
AT2G22795			unknown protein		Potri.007G008600 [exp]	11.48	0.9236

Compare expression of checked genes

Potri.002G051400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.