Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02740 305 / 7e-98 F-box/RNI-like superfamily protein (.1) AT4G02760 281 / 1e-88 RNI-like superfamily protein (.1.2.3) AT4G02733 177 / 2e-51 F-box family protein (.1) AT3G49040 42 / 0.0008 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210500 [exp] 837 / 0 AT4G02740 297 / 4e-95 F-box/RNI-like superfamily protein (.1) Potri.005G141800 [exp] 43 / 0.0006 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.007G048101 [exp] 43 / 0.0006 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012764 [exp] 45 / 0.0002 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.002G051800.1 pacid=42777160 polypeptide=Potri.002G051800.1.p locus=Potri.002G051800 ID=Potri.002G051800.1.v4.1 annot-version=v4.1 ATGGATACCCTCCTCCACACCCCAACCTCCATGGCCAAGCGTCCCTGCTCTTTTCCTTCCTCTCCCTCTCCATCCCCAAACCCTAACATGAACAATCAAC TCGATAATCTCCTCCGAACTTTTCTTAACCTCGCTGACTCTCCTTCTCTCTCCATCGACCACTCCTTCGAGCATCTCCTCGAGTCTTCCCCTTGCGATGC TGATAAGTCTCTCCTCATCGATCGCGCCCTTAAATTAGGATCGCTGCTTCTCGAAGCCGGCAAGCGCTCTGCTAGGAAACGCTCTTCTGTTCATAATTCA CTCACTTGGGCTCTCCCTCCCGATCTCACCATTAAGGTGCTTTCCATGCTTGATACACAAAGCCTGTGCTATGCTGCTGCAACTTGTTCAATGTTCTACA AATGTGCCATGGATCCCTTGTGCTATGCTAATATTGACTTGACGACTGTTGTCCCAAAAGTTAATAACGCTGTTGTGTCTACAATGATCCAGCGTGCTGG GAAAGCGCTTCTGTCTCTTAAGCTTGGTATAGTTCCAGGTCCGATTATGTCTCGTGGATCTTGTCAACCGATGGTATATGGCATCCAGAACGCTGTAGAA GTGTCCAACTTTTCATGGAATGATAAAAAGACCAGACAGGGGAAGGAGTCATCGATTCTTAGTAGATCCTGCTTAAATCCTTTAAGTGGGGACAGTGGTG CTGCTGGGGCTGTTTTGAGAGGGTTGCATTTATACAATATTGAAAGAATTGACAACACATCTCTCTGTGGGGCATTGTCAGCCTGCCCATCTCTGCTTGA TCTGGAAATAATTGGCCTACATGTTGAGTTGAGGCAAACATTGGTGTCGGTCAGCATGAATTGTCCCTTGATAGAGCGTTTGTTTTTCGAATCTTCAAAA ACAGGAAGAGATGACAGCCTGAAATCGCCAACATGTGTGGAGCTGGTAAATAATTGTCCAAATTTAACTTCATTGGCTCTTAGAGGTTTCAAGCTGTATG ATTATAAACTTCGCATACTTGTTAAGGGATTTCGCAAGCTAAAATATGTTGATTTTTCAACATCATATTCTATCACTGGAAGTTTTTTGAGGAACCTTGG AGGTAACATAGGTGGGAGTCTGCTGGAAGTTATGATTTTGCGAGACTGCATACATCTCAAAGAGCTGGAAGTTGCACGATTATTAACATCAGTTCTTGCT GGGGACTTTAAATATCTTCAACATCTTGATATATCAAACAGGGAAGGTTTGGCTGCTGCAGGTGACTCATATGGTAGATGTTACAGTTCAAGTATCATTC CTATGAAGCAAGTATTAGAAGAAAGACCTGAAATCTGTTTGCTAGCAGAATTTCCATCAGAAGGAAGTTTTATCGACATCAGCCAAATGACTGATAGCGA TCTAAATAGCGAGGTCAGCTTGTCATCATTACTGAGCAGTATTGCATCAGATGGTTCGTCTTTTATGTACACATCGGAAAGCAACTATAGTAGTGATCAG ACAAGTGGGAATGAGGAGGGTAGAGATTCTGGTTATGTTGTTTGTGAGGAAAGCTCAGATGAGTATGATTATCTGCTTGGCTAG
AA sequence Show only first row Show all	>Potri.002G051800.1 pacid=42777160 polypeptide=Potri.002G051800.1.p locus=Potri.002G051800 ID=Potri.002G051800.1.v4.1 annot-version=v4.1 MDTLLHTPTSMAKRPCSFPSSPSPSPNPNMNNQLDNLLRTFLNLADSPSLSIDHSFEHLLESSPCDADKSLLIDRALKLGSLLLEAGKRSARKRSSVHNS LTWALPPDLTIKVLSMLDTQSLCYAAATCSMFYKCAMDPLCYANIDLTTVVPKVNNAVVSTMIQRAGKALLSLKLGIVPGPIMSRGSCQPMVYGIQNAVE VSNFSWNDKKTRQGKESSILSRSCLNPLSGDSGAAGAVLRGLHLYNIERIDNTSLCGALSACPSLLDLEIIGLHVELRQTLVSVSMNCPLIERLFFESSK TGRDDSLKSPTCVELVNNCPNLTSLALRGFKLYDYKLRILVKGFRKLKYVDFSTSYSITGSFLRNLGGNIGGSLLEVMILRDCIHLKELEVARLLTSVLA GDFKYLQHLDISNREGLAAAGDSYGRCYSSSIIPMKQVLEERPEICLLAEFPSEGSFIDISQMTDSDLNSEVSLSSLLSSIASDGSSFMYTSESNYSSDQ TSGNEEGRDSGYVVCEESSDEYDYLLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02740			F-box/RNI-like superfamily pro...		Potri.002G051800 [exp]	0	1
AT4G36050			endonuclease/exonuclease/phosp...		Potri.007G057400 [exp]	17.66	0.6701
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	39.82	0.6981
AT5G40640			unknown protein		Potri.001G338900 [exp]	42.82	0.7182
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	46.28	0.6409	TFIIB1.2
AT3G44160			Outer membrane OMP85 family pr...		Potri.001G215500 [exp]	55.00	0.6505
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Potri.001G356300 [exp]	55.13	0.6792
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.004G168100 [exp]	81.42	0.6703
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.016G002800 [exp]	84.56	0.6049
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.005G191500 [exp]	85.52	0.6697	SEC5.1
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.015G071400 [exp]	98.45	0.6770

Compare expression of checked genes

Potri.002G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.