Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CPS.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 863 / 0 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G79460 280 / 5e-82 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 157 / 2e-39 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16740 94 / 2e-20 ATTPS03 terpene synthase 03 (.1.2) AT5G23960 87 / 1e-17 ATTPS21 terpene synthase 21 (.1.2) AT2G24210 86 / 6e-17 AtTPS10 terpene synthase 10 (.1) AT3G25830 84 / 1e-16 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 84 / 1e-16 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16730 80 / 2e-15 AtTPS02 terpene synthase 02 (.1) AT3G25810 80 / 4e-15 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210300 [exp] 1436 / 0 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 314 / 1e-94 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 308 / 1e-92 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 240 / 2e-67 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.007G074400 [exp] 118 / 1e-27 AT5G23960 441 / 6e-150 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 114 / 3e-26 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 109 / 1e-24 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 108 / 2e-24 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.007G119700 [exp] 108 / 3e-24 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022047 [exp] 1041 / 0 AT4G02780 812 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042593 [exp] 1023 / 0 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006925 [exp] 987 / 0 AT4G02780 759 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004323 [exp] 913 / 0 AT4G02780 733 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006917 [exp] 291 / 4e-92 AT4G02780 210 / 3e-62 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 283 / 6e-83 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 235 / 8e-66 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 236 / 2e-65 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 230 / 2e-64 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 230 / 5e-64 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G052100.2 pacid=42777603 polypeptide=Potri.002G052100.2.p locus=Potri.002G052100 ID=Potri.002G052100.2.v4.1 annot-version=v4.1 ATGTCCTCTCAATATTACTCCTCTAACCATCTCTTCTCTACGGTAGTACCAAGCACACCAAGATCTTCCTTTTCCTCCTCTAACAATATTATCCATCCCC TTCCTCCTCTATCTTTCCCTTCAGGTGTTTGGCTGTATGGGGCTAGAGGCAAGCAAGATAACTTTCATGCTCACTCAAGATGCAGTGCTATTTCCAAACC TCGCACTCAAGGATATGCAGACTTGTTTCATCAACAAAATGGTCTGCCATTGATAAACTGGCCTCACGATGTTGTGGAGGATGACACAGAAGAAGATGCT GCTAAGGTTTCTGTGGCTAAGGAAATAGACGAGCATGTCAAAACTATTAAAGCAATGCTGGAAATGATGGAGGATGGAGAGATAAGCATCTCAGCTTATG ACACCGCATGGGTTGCTCTTGTGGAAGACATTAACGGGAGTGGTCTTCCTCAATTCCCATCTAGCCTTCAGTGGATTGCAAACAATCAGCTTCCAGATGG TTCATGGGGTGATGCTGAAATATTTTTGGCGCACGATAGGTTGATTAATACGCTAGCATGTGTTGTCGCATTGAAATCATGGAATTTACATCAAGAAAAA TGTGAAAAAGGTATGTTATTTTTTAGAGACAACTTATGCAAGCTTGAAGATGAAAACGCTGAGCACATGCCTATTGGATTTGAAGTTGCTTTCCCTTCAC TTCTCGAGATAGCTAAAAAATTAGACATCGAAGTTCCTTATGATTCTCCTGTCCTGCAAGAGATTTATGCCAGTAGAAATTTAAAGCTGACAAGGATACC CAAGGACATAATGCACAATGTGCCCACAACACTACTCCATAGCTTAGAAGGAATGCCAGGCCTGGAATGGAAAAGGCTTCTAAAATTACAGAGCCAAGAT GGGTCATTCTTGTTCTCCCCATCCTCCACTGCCTTCGCACTCAGTCAAACTAAAGATAAAAACTGCATGGAATATTTAAATAAGGCGGTCCAAAGATTCG AAGGTGGAGTTCCCAATGTCTACCCGGTTGACTTATTTGAGCACATATGGGCCGTGGATCGTTTGCAGCGCTTGGGAATATCAAGATATTTCGAGTCCCA GATCGACGAATGTGTCAATTATATTCATAGATATTGGACTGAAGATGGCATTTGCTGGGCAAGAAACTCTGAGGTCCATGATATTGATGACACAGCCATG GGATTCAGGGTACTAAGATTAAATGGGCACCATGTTTCTGCTGACGTGTTCAAGCATTTTGAGAAAGGGGGTGAATTTTTCTGCTTTGCGGGGCAGTCAA CAGCGGCAGTAACAGGAATGTTCAACCTGTATAGAGCTTCTCAGCTGCTGTTTCCGGGAGAGAAGATCCTTGAGAAGGCCAAGGAATTTTCATTCAAATT CCTAAGAGAAAAACAAGCTGCTAATGAGCTTCTAGATAAATGGCTTATAACGAAGGACTTACCTGGCGAGGTGGGATTTGCATTGGAAATTCCATGGCAT GCGAGCTTGCCTCGCGTGGAGTCGAGATTCTACATAGAACAGTATGGTGGTGAAGATGACGTATGGATTGGGAAGACCCTTTACAGAATGCCATATGTAA ACAACAATGAGTATCTCCAGCTGGCAAGATTAGACTACAACAACTGCCAAGCATTACATCGCATTGAATGGGCCAATTTTCAAAAGTGGTATGAAGAATG CAATCTAAGAGATTTTGGGATAAGCAGAAAAACCCTTCTCTACTCTTATTTTTTGGCAGCAGCCAGTGTATTTGAGCCGGAAAGGTCCAATGAGCGACTT GCATGGGCTAAGACTACGATCTTGCTCGAGATGATCCACTCTTATTTCCACGAGGACGATGACAATTCTGGTGCTCAGAGGAGAACTTTTGTACATGAAT TCAGCACCGGTATTAGCATTAATGGAAGGAGGTCGGGTACAAAGAAGACAAGGAAGGAACTCGTTAAGATGCTGCTCGGAACCCTAAATCAGCTCTCTTT TGGCGCATTGGAGGTTCATGGTCGAGACATTAGCCACAGTTTACGTCATGCTTGGGAAAGGTGGCTCATAAGCTGGGAATTGGAAGGAGATAGACGCCGA GGGGAAGCAGAACTACTGGTGCAAACAATACACCTTACTGCTGGCTATAAGGTCTCTGAGGAGCTCTTGGTCTATCATCCTCAATATGAACAGCTCGCCG ACCTGACAAACAGAATATGCTATCAACTTGGTCATTACCAGAAGAACAAGGTGCATGACAACGGAAGCTACAGCACTATTACCGGGAGCACTGACAGAAT CACAACCCCACAAATAGAATCTGACATGCAAGAACTTATGCAGTTAGTGATCCAAAAGACCTCGGATGGAATAGATCCTAAAATCAAGCAAACATTCCTT CAAGTAGCCAAGAGTTTTTACTACACCGCATTCTGTGATCCTGGGACTATCAACTACCATATAGCTAAAGTGCTTTTTGAGACAGTGGCTTAA
AA sequence Show only first row Show all	>Potri.002G052100.2 pacid=42777603 polypeptide=Potri.002G052100.2.p locus=Potri.002G052100 ID=Potri.002G052100.2.v4.1 annot-version=v4.1 MSSQYYSSNHLFSTVVPSTPRSSFSSSNNIIHPLPPLSFPSGVWLYGARGKQDNFHAHSRCSAISKPRTQGYADLFHQQNGLPLINWPHDVVEDDTEEDA AKVSVAKEIDEHVKTIKAMLEMMEDGEISISAYDTAWVALVEDINGSGLPQFPSSLQWIANNQLPDGSWGDAEIFLAHDRLINTLACVVALKSWNLHQEK CEKGMLFFRDNLCKLEDENAEHMPIGFEVAFPSLLEIAKKLDIEVPYDSPVLQEIYASRNLKLTRIPKDIMHNVPTTLLHSLEGMPGLEWKRLLKLQSQD GSFLFSPSSTAFALSQTKDKNCMEYLNKAVQRFEGGVPNVYPVDLFEHIWAVDRLQRLGISRYFESQIDECVNYIHRYWTEDGICWARNSEVHDIDDTAM GFRVLRLNGHHVSADVFKHFEKGGEFFCFAGQSTAAVTGMFNLYRASQLLFPGEKILEKAKEFSFKFLREKQAANELLDKWLITKDLPGEVGFALEIPWH ASLPRVESRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLQLARLDYNNCQALHRIEWANFQKWYEECNLRDFGISRKTLLYSYFLAAASVFEPERSNERL AWAKTTILLEMIHSYFHEDDDNSGAQRRTFVHEFSTGISINGRRSGTKKTRKELVKMLLGTLNQLSFGALEVHGRDISHSLRHAWERWLISWELEGDRRR GEAELLVQTIHLTAGYKVSEELLVYHPQYEQLADLTNRICYQLGHYQKNKVHDNGSYSTITGSTDRITTPQIESDMQELMQLVIQKTSDGIDPKIKQTFL QVAKSFYYTAFCDPGTINYHIAKVLFETVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	0	1	CPS.1
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004200 [exp]	1.41	0.9786
					Potri.019G016100 [exp]	6.32	0.9729
					Potri.005G081100 [exp]	6.92	0.9637
AT1G27040			Major facilitator superfamily ...		Potri.002G129500 [exp]	7.34	0.9741
					Potri.001G019985 [exp]	8.77	0.9693
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166400 [exp]	10.39	0.9699
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.002G209602 [exp]	11.61	0.9714
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067600 [exp]	12.40	0.9637
					Potri.003G204450 [exp]	12.96	0.9621
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	13.41	0.9663

Compare expression of checked genes

Potri.002G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.