Plant FIBer expression Database

Potri.002G052200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G63170 290 / 3e-98 Chalcone-flavanone isomerase family protein (.1)
AT2G26310 120 / 2e-32 Chalcone-flavanone isomerase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G048500
[exp]
132 / 2e-35 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
Potri.006G219600
[exp]
130 / 7e-35 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042592
[exp]
335 / 9e-116 AT3G63170 298 / 2e-101 Chalcone-flavanone isomerase family protein (.1)
Lus10022046
[exp]
321 / 3e-110 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1)
Lus10022045
[exp]
315 / 1e-107 AT3G63170 283 / 7e-96 Chalcone-flavanone isomerase family protein (.1)
Lus10042591
[exp]
303 / 4e-103 AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1)
Lus10032083
[exp]
133 / 3e-37 AT3G63170 140 / 3e-40 Chalcone-flavanone isomerase family protein (.1)
Lus10014620
[exp]
108 / 2e-28 AT3G63170 112 / 3e-30 Chalcone-flavanone isomerase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0560 Chalcone-like PF16036 Chalcone_3 Chalcone isomerase-like
Representative CDS sequence
>Potri.002G052200.1 pacid=42777884 polypeptide=Potri.002G052200.1.p locus=Potri.002G052200 ID=Potri.002G052200.1.v4.1 annot-version=v4.1
ATGGTTTCACTGCGCTTCCCGTTCTTGTTTTCTCAGCCCAAGAAACACCCCAACGGCATCTCCCGTACCATCACTTCCCGCTCCTTCCCCGCCACCACAA
CCACCGTGGCATGTGCCTTGGCCGCCGGAGCTGCCGCATTTGCAGGCATAGCAGCCACCCGCAACTCCAAAAATCCAAAACAAGATAACCCATTAATCCA
AAACGCCCTGAATCTTCTCTTCTCCAATCACTTGCTAGCACCGTGGGCTTCACTCTCTCTAGCAGACCCTTCACCTTCAGTTGTGGAAACGAAGACCGGA
GCAGCGTTTCCTTCGGTTATTTTCGAGTCTCGGAGACTTTTGGGAATTGGGCTGCGTAAAAAGACTATCTTGGGATTGAAGAACATTGATGTCTACGCCT
TCGGTGTTTATGCGGATGCTGATGAAGTGAGGAAAGTTCTGAGTGAAAAATATGGAAAACTCTCTGTTTCAGAACTCAAGGAAAGCAAGGAGTTTAAAGA
GGATTTTATGGGAGGTGATATTGGCATGACTGTTAGACTTCAGATAGTCTATAGTAAGCTAAGCATTCGCTCTGTTAGAAGTGCCTTTGAAGAGTCTGTA
GGAAGCAGACTGCAAAATTTTGGGGAACCAAATAGCAAGGAATTGCTTCAGAGGTTCACTTCTCAGTTTAAGGATGAATATAAAATACCACGGGGTTCTG
TGATTGAGCTTTCAAGGGAGCAAGGCCATGTACTTCGCACAACAATTGATGGGAAGGAGGTGGGAAGTATCCAGAGCAAACTCCTCTGCCGATCGATTTT
AGATCTATACATTGGCGAGGATCCATTTGATAAAGAGGCCAAAGAAGACATAGAAAGCAAGTTTGCATCTCTCCTTCAAGTAGATCACTGA
AA sequence
>Potri.002G052200.1 pacid=42777884 polypeptide=Potri.002G052200.1.p locus=Potri.002G052200 ID=Potri.002G052200.1.v4.1 annot-version=v4.1
MVSLRFPFLFSQPKKHPNGISRTITSRSFPATTTTVACALAAGAAAFAGIAATRNSKNPKQDNPLIQNALNLLFSNHLLAPWASLSLADPSPSVVETKTG
AAFPSVIFESRRLLGIGLRKKTILGLKNIDVYAFGVYADADEVRKVLSEKYGKLSVSELKESKEFKEDFMGGDIGMTVRLQIVYSKLSIRSVRSAFEESV
GSRLQNFGEPNSKELLQRFTSQFKDEYKIPRGSVIELSREQGHVLRTTIDGKEVGSIQSKLLCRSILDLYIGEDPFDKEAKEDIESKFASLLQVDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G63170 Chalcone-flavanone isomerase f... Potri.002G052200
[exp]
0 1
AT5G10610 CYP81K1 "cytochrome P450, family 81, s... Potri.017G023850
[exp]
2.64 0.9268
AT5G10600 CYP81K2 "cytochrome P450, family 81, s... Potri.017G028150
[exp]
3.74 0.9265
AT5G10600 CYP81K2 "cytochrome P450, family 81, s... Potri.017G028200
[exp]
4.58 0.9222 CYP81R2v2,IFS1.55
AT5G10600 CYP81K2 "cytochrome P450, family 81, s... Potri.017G028450
[exp]
4.89 0.9221
AT5G10610 CYP81K1 "cytochrome P450, family 81, s... Potri.017G028100
[exp]
5.91 0.9211
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.005G215900
[exp]
6.32 0.8827
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Potri.002G229325
[exp]
12.96 0.8822
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.001G436500
[exp]
15.62 0.8194
AT4G23900 Nucleoside diphosphate kinase ... Potri.001G091001
[exp]
15.96 0.8677
AT2G36830 TIP1;1, GAMMA-T... TONOPLAST INTRINSIC PROTEIN 1;... Potri.009G005400
[exp]
16.94 0.8934

Potri.002G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.