Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19330 995 / 0 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 795 / 0 ABAP1 ARMADILLO BTB protein 1 (.1) AT3G06190 85 / 2e-17 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT2G23140 82 / 1e-15 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G19000 78 / 6e-15 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G43700 77 / 7e-15 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT1G23030 76 / 5e-14 PUB11 ARM repeat superfamily protein (.1) AT1G71020 75 / 6e-14 ARM repeat superfamily protein (.1.2) AT3G03740 75 / 8e-14 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT5G67340 74 / 3e-13 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210000 [exp] 1265 / 0 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G150100 [exp] 1021 / 0 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G090900 [exp] 885 / 0 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G184200 [exp] 83 / 2e-17 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 81 / 8e-16 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 80 / 1e-15 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.004G194200 [exp] 77 / 7e-15 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.007G051000 [exp] 77 / 2e-14 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G113900 [exp] 76 / 6e-14 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034070 [exp] 971 / 0 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 963 / 0 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 869 / 0 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 853 / 0 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10041235 [exp] 88 / 4e-19 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 86 / 1e-17 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10043471 [exp] 77 / 2e-14 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 77 / 4e-14 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10040834 [exp] 74 / 3e-13 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10003365 [exp] 73 / 4e-13 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.002G052700.2 pacid=42778348 polypeptide=Potri.002G052700.2.p locus=Potri.002G052700 ID=Potri.002G052700.2.v4.1 annot-version=v4.1 ATGGATCGCCGGACGATCTCCACGAGAAAAGGCTCGAAGCGAAAGTTGGAGCAAGATTTCGAACACGAAAATCAAGATCGCCACAAGATCCCGGCCACCG ACACTGCCGCCGGCTACGAGAGTCACCAGAAACTAACGCGTCATATTCAAACGCAAGTTGATATCCTCAATTCTTCCTTCTCTTCTCTTGAGGCAGATCG CGCCGCCGCCAGGCGCGCCACTAGCGTCCTCTCTCAATTTGCCAAAACAGAGGAACTCGTGGATACGATGGTGGATTGTGGTGCGGTGCCCGCGTTGGTG ATGCACCTTCAAGCGCCACCGCATACGAGAGGGGAAAATGGTTCAAAACTGTATGAACATGAAGTAGAGAAAGGAAGTGCTCTGGCTCTTGGACTTCTTG CTGTAAAACCGGAGCATCAACAACTAATAGTAGATGCTGGAGCTCTGACCCATCTCGTGGAATTGTTGAAGAGACATAAGAGTGTTGATAACTCCCGAAC AGTCAATGGTGTTGTTAGGAAAGCAGCTGATGCAATCACTAACCTTGCTCATGAGAATAGTGGCATCAAAACACGTGTCAGGATTGAAGGTGCCATCCCC TATCTTGTTGAATTGCTTGAACATGCTGATGCTAAGGTACAGAGAGCAGCTGCAGGTGCCTTGCGGACCCTTGCATTCAAAAATGATGAGAACAAAAATC AGATTGCAGAATGTAATGCTCTACCCACTCTTGTAATAATGCTTGGATCCGAGGATACTGCTATACATTATGAAGCGGTTGGTGTGATTGGAAATTTGGT TCACTCGTCCCCACACATAAAGAAAGCAGTTCTTCTTGCTGGAGCTTTACAACCTGTAATTGGATTGCTAAGCTCTCCCTGTTCAGAAAGCCAAAGAGAA GCAGCTTTGTTATTGGGTCAATTTGCAGCAGCTGATTCAGATTGCAAGGTGCACATTGTTCAGAGAGGAGCTGTCAAGCCATTAATTGATATGCTTGAGT CCTCAGATGTGCAGCTCAAAGAAATGGCAGCCTTTGCGCTTGGGAGGTTGGCTCAGGAAACACACAACCAAGCTGGAATCGCACATAATGGTGGTATCGT TCCATTACTTAGGCTTCTTGATTCCAAAAGTGGACCACTTCAACACAATGCTGCTTTTACCCTATATGGTCTTGTGGATAATGAGGATAATGTTGCAGAT CTTATCAAGGTTGGGGGTTTTCAGAAACTCCAATATGGAGAATTCATTGTCCAACAAACAAAGGATTGTGTTGCGAAAACAATGAGAAGGCTAGAGGAGA AGATTCACGGACGGGTATTGAACCATCTCTTATATTTGATGCGGGTTGCTGAAAGGAATATTCAGAGACGAGTTGCTCTGGCTCTTGCTCATCTTTGTGC TCCTGATGACAGAAAAGTAGTTTTTCTTGATAAAAATGGGTTAGATTTGTTGTTGGGGCTTTTGGAGTCTGGAAGCGTGAAGCTGCAATGTGATGGCTCG GTAGCATTATACAGGTTGGCTACCCAAGCCAGCTCAGTATTTCCTGTGGATGCAGCTCCTCTATCTCCAACCCCGCAGGTGTATTTGGGTGAGCAATACG TCAACAATCCTACATTGTCTGATGTTACATTCTTAGTCGAAGGAAAGCGGTTCTATGCTCACCGAATTTGTCTGCTTGCTTCTTCGGATGCTTTCCGTGC GATGTTTGATGGGGGGTACAGGGAAAGGAATGCAAAAGATGTGGAGATTCCAAATATTAGATGGGATGTTTTTGAATTGATGATGAGGTTCATATATACA GGATCAGTGGAAATCAATGTAGATCTTGCTCAGGATCTCCTTAGAGCTGCTGACCAATATCTTTTGGATGGTCTCAAGCGTCTATGTGAATGTACCATTG CACAGGATATTTCTGTGGAAAATGTCTCTCTCATGTACGAGTTGTCCGAGGGCTTCAATGCTATGTCATTAAGGGAATCATGCATTCTATTCATATTGGA GCAATTTGACAAATTATGTACCAAGCCATGGTCATCGCATTTGATCCAACGTATTATGCCTGATATACGCCATTACTTCGAGAAAGCGCTTAGCAAGCCT ACCAAACTAACTTGA
AA sequence Show only first row Show all	>Potri.002G052700.2 pacid=42778348 polypeptide=Potri.002G052700.2.p locus=Potri.002G052700 ID=Potri.002G052700.2.v4.1 annot-version=v4.1 MDRRTISTRKGSKRKLEQDFEHENQDRHKIPATDTAAGYESHQKLTRHIQTQVDILNSSFSSLEADRAAARRATSVLSQFAKTEELVDTMVDCGAVPALV MHLQAPPHTRGENGSKLYEHEVEKGSALALGLLAVKPEHQQLIVDAGALTHLVELLKRHKSVDNSRTVNGVVRKAADAITNLAHENSGIKTRVRIEGAIP YLVELLEHADAKVQRAAAGALRTLAFKNDENKNQIAECNALPTLVIMLGSEDTAIHYEAVGVIGNLVHSSPHIKKAVLLAGALQPVIGLLSSPCSESQRE AALLLGQFAAADSDCKVHIVQRGAVKPLIDMLESSDVQLKEMAAFALGRLAQETHNQAGIAHNGGIVPLLRLLDSKSGPLQHNAAFTLYGLVDNEDNVAD LIKVGGFQKLQYGEFIVQQTKDCVAKTMRRLEEKIHGRVLNHLLYLMRVAERNIQRRVALALAHLCAPDDRKVVFLDKNGLDLLLGLLESGSVKLQCDGS VALYRLATQASSVFPVDAAPLSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYRERNAKDVEIPNIRWDVFELMMRFIYT GSVEINVDLAQDLLRAADQYLLDGLKRLCECTIAQDISVENVSLMYELSEGFNAMSLRESCILFILEQFDKLCTKPWSSHLIQRIMPDIRHYFEKALSKP TKLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.002G052700 [exp]	0	1
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	1.41	0.8314
AT3G25100		CDC45	cell division cycle 45 (.1)		Potri.015G090600 [exp]	8.12	0.8032
AT4G23440			Disease resistance protein (TI...		Potri.003G129600 [exp]	10.24	0.7111
AT1G47380			Protein phosphatase 2C family ...		Potri.014G031200 [exp]	10.67	0.6998
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	10.81	0.7599
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.018G112800 [exp]	12.96	0.7404
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	13.78	0.7487
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	14.69	0.7299
AT2G30350			Excinuclease ABC, C subunit, N...		Potri.013G155900 [exp]	20.78	0.6767
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.003G192400 [exp]	23.74	0.7540

Compare expression of checked genes

Potri.002G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.