Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RANGAP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63130 664 / 0 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 588 / 0 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G06000 160 / 5e-46 RNI-like superfamily protein (.1) AT1G10510 118 / 6e-28 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT1G47200 54 / 3e-08 WPP2 WPP domain protein 2 (.1) AT5G43070 47 / 3e-06 WPP1 WPP domain protein 1 (.1) AT5G25910 44 / 0.0003 AtRLP52 receptor like protein 52 (.1) AT1G62950 43 / 0.0007 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209600 [exp] 885 / 0 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 673 / 0 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.008G193700 [exp] 114 / 2e-26 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.002G122000 [exp] 50 / 6e-07 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1) Potri.014G021900 [exp] 49 / 1e-06 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.005G011600 [exp] 46 / 8e-05 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.003G117500 [exp] 43 / 0.0005 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014670 [exp] 752 / 0 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10006930 [exp] 751 / 0 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10010523 [exp] 624 / 0 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10034066 [exp] 622 / 0 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10030829 [exp] 112 / 6e-26 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030658 [exp] 111 / 1e-25 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10042643 [exp] 60 / 2e-10 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1) Lus10010235 [exp] 50 / 5e-07 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10009747 [exp] 50 / 6e-07 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF13943 [poplar] [flax] WPP WPP domain
Representative CDS sequence Show only first row Show all	>Potri.002G052900.4 pacid=42777780 polypeptide=Potri.002G052900.4.p locus=Potri.002G052900 ID=Potri.002G052900.4.v4.1 annot-version=v4.1 ATGATAGTAGTTATGGTGTGTATGTATGTTTCCAGGTTACTTTTCGACATGGATTCTGCAACACAGACTTTGCAGCACCGCATATCTGTCAAATTGTGGC CCCCTGGTCAGAGTACAAGGCTAATGCTTGTAGAGCGGATGACAAAGAATTTCATTACCCCATCCTTTATCTCCAGAAAGTATGGGTTGTTGAGCAAAGA GGAGGCTGAGGAGGATGCCAAGAAAATTGAAGAGGTGGCTTTTGCAGCTGCAAACCAGCACTATGAGAAACAGCCGGATGGTGATGGAAGTTCTGCTGTG CAGATATATGCTAAAGAGTCTAGTAGGCTTATGTTGGAGGTTCTCAAAAGGGGCCCCAGAATACAGGAGGATGAAGAGGTGGCAGCGACAGCCGATAAAG GTGCGGCTACTCTTGCGAACGTGTTTGATATATCTGGTGGCCGGCGGGCATTTATTAGTGGAGAGGAGGCTGAGGAAGTTTTAAAACCCCTCAAGGTGCC AGGAAACTTGTATACTAGGATATGTTTCAGCAATAGAAGCTTTGGCTTGGAGGCAGCCCATGTCACAGAACCAATCTTGTTGTCCATAAGGGATCAATTG ACAGAAGTGGACCTTTCGGACTTTGTTGCAGGAAGATCGGAATCAGAAGCTCTTGAAGTGATGAATATATTTTCTTCAGCCCTAGAAGGCTGTAATCTGA GGTATCTGAACCTTTCAAACAATGCCTTAGGTGAAAAGGGTGTCAGGGCTTTTGAGAAACTTCTCAAGACCCAGAATAATTTGGAGGAGCTTTATTTGAT AAATGATGGTATCTCGGAAGAAGCTGCACGTGCAGTTTGTGAGCTGATTCCTTCAACCGAGAAGCTCAAGGTCCTTCATTTTCACAATAACATGACTGGA GATGAAGGTGCAGTTGCTATTGCTGAGATGGTGAAACGTTCCACTGCGCTGGAGGATTTTCGATGTTCTTCAACAAGGGTGGGCTTGGAAGGTGGTGTTG CCCTAGCTGAAGCTCTTGGATCATGTAACCATTTAAGGAAGCTTGATCTACGTGATAATATGTTTGGTGTGGAAGCTGGTATTGCTCTGAGCAGGTCTTT ATTTGCATTTGCAGACCTTACTGAAGCTTACCTCAGTTATCTTAATTTGGAGGACGAGGGGGCAGAAGCACTTGCTAATGCTTTAAAGGAATGTGCACCT TCATTGGAAGTTCTGGATATGGCTGGGAATGACATTACAGCCAAAGGTGCTTCTTCTTTGGCTGCCTGCATTGCGGCAAAACAATTTCTCACTAAATTAA ATCTTTCTGAGAATGAACTGAAGGATGAAGGTGCTATTTTGATTGCCAAGGCAATTGAAGTGGGCCATGGCCAGCTAAATGAAGTTGATTTGAGCATTAA TGCAATTAGACGAGCTGGGGCAAGGCTCCTGGCACAGGCTGTTGTGGATAAGCCTGGATTTAAATCGTTAAATATCAATGGTAATTACATATCTGATGAA GGGATTGATGAGGTGAAGGATATATTTAAGGGTTTGCCTAATGTGCTTGAAAATTTGGATGAGAATGATCCAGATGGAGAAGATCTTGATGAAGATGCAA AAGAGGAGGATGAGGATACTGACAATGAAGATGAATTGGAATCAAAACTCAAGGGACTAGAAATTAAGCATGAAGAGTAG
AA sequence Show only first row Show all	>Potri.002G052900.4 pacid=42777780 polypeptide=Potri.002G052900.4.p locus=Potri.002G052900 ID=Potri.002G052900.4.v4.1 annot-version=v4.1 MIVVMVCMYVSRLLFDMDSATQTLQHRISVKLWPPGQSTRLMLVERMTKNFITPSFISRKYGLLSKEEAEEDAKKIEEVAFAAANQHYEKQPDGDGSSAV QIYAKESSRLMLEVLKRGPRIQEDEEVAATADKGAATLANVFDISGGRRAFISGEEAEEVLKPLKVPGNLYTRICFSNRSFGLEAAHVTEPILLSIRDQL TEVDLSDFVAGRSESEALEVMNIFSSALEGCNLRYLNLSNNALGEKGVRAFEKLLKTQNNLEELYLINDGISEEAARAVCELIPSTEKLKVLHFHNNMTG DEGAVAIAEMVKRSTALEDFRCSSTRVGLEGGVALAEALGSCNHLRKLDLRDNMFGVEAGIALSRSLFAFADLTEAYLSYLNLEDEGAEALANALKECAP SLEVLDMAGNDITAKGASSLAACIAAKQFLTKLNLSENELKDEGAILIAKAIEVGHGQLNEVDLSINAIRRAGARLLAQAVVDKPGFKSLNINGNYISDE GIDEVKDIFKGLPNVLENLDENDPDGEDLDEDAKEEDEDTDNEDELESKLKGLEIKHEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.002G052900 [exp]	0	1	Pt-RANGAP1.2
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.016G075800 [exp]	2.44	0.8613
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	2.64	0.8687
AT3G14420			Aldolase-type TIM barrel famil...		Potri.004G065200 [exp]	3.00	0.8610
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.010G097800 [exp]	5.09	0.8192
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090400 [exp]	7.00	0.8387
					Potri.001G062100 [exp]	10.48	0.8225
AT2G40095			Alpha/beta hydrolase related p...		Potri.008G067700 [exp]	10.77	0.8486
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G150700 [exp]	11.66	0.8287
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	15.58	0.8247	ARR12.2
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	18.16	0.8164

Compare expression of checked genes

Potri.002G052900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.