Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63140 595 / 0 CSP41A chloroplast stem-loop binding protein of 41 kDa (.1) AT1G09340 199 / 8e-60 CSP41B, CRB, HIP1.3 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209500 [exp] 691 / 0 AT3G63140 597 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.013G006100 [exp] 202 / 4e-61 AT1G09340 647 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Potri.005G010266 [exp] 199 / 5e-60 AT1G09340 652 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014669 [exp] 613 / 0 AT3G63140 592 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10006931 [exp] 606 / 0 AT3G63140 582 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10031435 [exp] 201 / 9e-61 AT1G09340 644 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10001525 [exp] 198 / 2e-59 AT1G09340 638 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.002G053000.1 pacid=42776851 polypeptide=Potri.002G053000.1.p locus=Potri.002G053000 ID=Potri.002G053000.1.v4.1 annot-version=v4.1 ATGGCTACTCTTGCTCCTCCATCATCCTCCTCTCTCACCTTCTCCGGTCCATCTTTGAAGCTTTCTCATCTTTCTCTCTTATGCTCATCACGCCTTTCTC TTTCTTCTTTGTCGCAATTATCCCCACTCTCTTCTTCTCTCTCAATATCTCCTTCTTTTGCTGCACAACCCATATGTTCAAGACGCCTCTTTACCTCTTC TTTCACAGTCAAGGCTAGTGCTGCAGAGAAAAAGAAGGTCCTTATAGTTAATACGAACAGTGGTGGTCATGCAGTTATTGGGTTCTATTTTGCTAAAGAG CTTTTGGGTTCTGGCCATGAAGTCACTATCTTGACTGTTGGTGAAGAGAGCTCTGACAAAATGAAGAAGCCTCCGTTCAGTAGGTTCTCAGAAATTGTGA GTGCTGGAGGGAAGACAGTATGGGGAAACCCAGCGGAGGTAGGGAAGGTTGTGGAAGGAGCAGCATTTGATGTGGTGCTGGATAACAATGGCAAGGACCT GGATGCTGTGAGGCCTGTAGTAGACTGGGCCAAGAGTGCTGGTGTGAAGCAGTTCTTGTTCATCAGCAGTGCTGGAATCTACAAAGCAACCGATGAACCT CCTCATGTTGAAGGGGATGTTGTTAAAGCTGATGCTGGACATGTTGGGGTGGAGAAATACATAGCAGAGATTTTCAGTAGTTGGGCTATATTCCGTCCAC AATACATGATTGGGTCTGGAAACAATAAAGATTGTGAGGAGTGGTTTTTTGATCGAATTGTCCGGAAAAGGCCAGTGCCAATCCCTGGCTCTGGGATGCA ACTGACTAATATCGCCCATGCCAGGGACTTATCCTCCATGCTTACTCTAGCAGTAGAGAACCCAGAAGCTGCATCTGGCAGGATATTCAACTGTGTAAGC GACCGCGCTGTGACCCTGGATGGAATGGCCAAACTCTGCGCACAAGCTGCAGGTCTACCGGTAGAGATTGTGCATTACGATCCAAAAGTTGTTGGAATTG ATGCAAAGAAAGCTTTTCCTTTCCGAAATATGCACTTCTATGCGGAACCACGAGCTGCCAAGGAAATATTGGGATGGCAGGGTACCACAAACCTTCCTGA AGACTTGAAAGAGCGATTTGATGATTATGTAAAGATTGGCCGAGACAAGAAGCCAATGCAATTCGAGATTGATGATAAAATACTAGAGTCACTCAAAGTT CCAGTAGCCGCGTGA
AA sequence Show only first row Show all	>Potri.002G053000.1 pacid=42776851 polypeptide=Potri.002G053000.1.p locus=Potri.002G053000 ID=Potri.002G053000.1.v4.1 annot-version=v4.1 MATLAPPSSSSLTFSGPSLKLSHLSLLCSSRLSLSSLSQLSPLSSSLSISPSFAAQPICSRRLFTSSFTVKASAAEKKKVLIVNTNSGGHAVIGFYFAKE LLGSGHEVTILTVGEESSDKMKKPPFSRFSEIVSAGGKTVWGNPAEVGKVVEGAAFDVVLDNNGKDLDAVRPVVDWAKSAGVKQFLFISSAGIYKATDEP PHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHARDLSSMLTLAVENPEAASGRIFNCVS DRAVTLDGMAKLCAQAAGLPVEIVHYDPKVVGIDAKKAFPFRNMHFYAEPRAAKEILGWQGTTNLPEDLKERFDDYVKIGRDKKPMQFEIDDKILESLKV PVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	0	1
AT2G21960			unknown protein		Potri.005G084400 [exp]	1.00	0.9873
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	2.23	0.9788
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	3.00	0.9798
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.014G140500 [exp]	3.16	0.9832
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.005G010266 [exp]	4.00	0.9753
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	4.00	0.9789	gdcH3,Pt-GDCH.3
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.008G077400 [exp]	4.24	0.9745
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.016G040200 [exp]	4.69	0.9739	LYC.2
AT2G26500			cytochrome b6f complex subunit...		Potri.004G147300 [exp]	4.89	0.9769
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Potri.019G089700 [exp]	5.09	0.9723

Compare expression of checked genes

Potri.002G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.