Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02800 276 / 4e-91 unknown protein AT1G30050 116 / 2e-29 unknown protein AT5G01970 115 / 3e-29 unknown protein AT2G30530 98 / 9e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209400 [exp] 514 / 0 AT4G02800 291 / 3e-97 unknown protein Potri.016G141300 [exp] 115 / 1e-28 AT5G01970 353 / 2e-119 unknown protein Potri.006G111900 [exp] 114 / 7e-28 AT5G01970 352 / 2e-118 unknown protein Potri.013G160100 [exp] 103 / 2e-24 AT2G30530 266 / 8e-85 unknown protein Potri.019G132300 [exp] 101 / 1e-23 AT2G30530 253 / 9e-80 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000658 [exp] 285 / 1e-94 AT4G02800 266 / 1e-87 unknown protein Lus10022037 [exp] 276 / 3e-91 AT4G02800 276 / 1e-91 unknown protein Lus10014668 [exp] 273 / 6e-90 AT4G02800 262 / 1e-85 unknown protein Lus10042577 [exp] 126 / 1e-34 AT4G02800 109 / 1e-28 unknown protein Lus10035609 [exp] 101 / 3e-24 AT1G30050 187 / 5e-56 unknown protein Lus10034444 [exp] 102 / 5e-24 AT2G30530 268 / 3e-86 unknown protein Lus10019115 [exp] 102 / 6e-24 AT2G30530 267 / 5e-86 unknown protein Lus10031947 [exp] 99 / 3e-23 AT5G01970 263 / 1e-85 unknown protein Lus10035153 [exp] 98 / 2e-22 AT5G01970 264 / 8e-85 unknown protein Lus10003240 [exp] 95 / 4e-21 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G053100.1 pacid=42779989 polypeptide=Potri.002G053100.1.p locus=Potri.002G053100 ID=Potri.002G053100.1.v4.1 annot-version=v4.1 ATGGCTGCTTCAGTGGATTCCCCATCCCCAGCTGCCCACCTCAACAAGGAGTCTACTAGCTTGATGGTTTCTTCACCTCTGTTTAGCCCGGATTCAGACA AGCGTTTTTGGAGCGCTCTGCGTAGCCGGATGGGCACGCTTCTTGAGAATCGGCAACGCCATGTCTCAATTGGTCAAGATCAGCTCAATCTTGATCCTTC TTTTGGCACATATGTGAGAGCAGGTGAATCAGATCGAGCTAAGAGAATGAAGGAAGATTCGTTGCTTCTCCTAAGAGGGTTCGACTCCATTTCTCAAAAC CTTTCTCAGCTCTCTAATAACCTGGACAATGCTCTTCAGGGAGCTAGACATCTAGCTGAACCACCCACATTGAGAGAAATATTCCACAGTGTACTCGAGG ACTCTGAGATCAAACGAGAAGATGAAGAAAAGCTACAAAATGAAGAAGAAGGAAAGAAAGTATTGAAGAGGAAGTTTGACCCAGATGACAGATCAGAAGA TCAAGAAAATGATTTTCACAAGGGAAATGAGCAATGCCTTGAGAATAAAAGGCTGAAGAGAGCCAAAAATCTGGCAGTTTCCATGGCAACAAAAGCAGCT GCACTTGCTAGGGAACTGAAGTCCATAAGATCCGATTTATGTTTTATGCAAGAGCGATGCGCTCTGCTTGAAGAGGAAAACAGGAGGATTCGAGATGGAT TCTGTGAAGGGACTAGACCAGAAGAAGATGATCTGATGAGGCTTCAAATGGAAGCACTACTTGCAGAAAAATCCAGATTAGCAAATGAAAATGCTAATCT TAAACGGGAAAATCAATGTCTTCACCAGCTTGTAGAGTACCACCAAATCACAACACAAGATCTCTCTGCATCCTATGAGCAAGTTATACGTGGAATGTGC TTGGACTTTTCTTCTCCATCATCCTCTATCATGGAAGACAATGAAGATGACTGTGAAATTGCAAAAACACCTCAGAAGAATGTTTTTGGATTTGCCACTT CAATCGATGAATCCTGTTACGAAGGTGGGGATGAGTAA
AA sequence Show only first row Show all	>Potri.002G053100.1 pacid=42779989 polypeptide=Potri.002G053100.1.p locus=Potri.002G053100 ID=Potri.002G053100.1.v4.1 annot-version=v4.1 MAASVDSPSPAAHLNKESTSLMVSSPLFSPDSDKRFWSALRSRMGTLLENRQRHVSIGQDQLNLDPSFGTYVRAGESDRAKRMKEDSLLLLRGFDSISQN LSQLSNNLDNALQGARHLAEPPTLREIFHSVLEDSEIKREDEEKLQNEEEGKKVLKRKFDPDDRSEDQENDFHKGNEQCLENKRLKRAKNLAVSMATKAA ALARELKSIRSDLCFMQERCALLEEENRRIRDGFCEGTRPEEDDLMRLQMEALLAEKSRLANENANLKRENQCLHQLVEYHQITTQDLSASYEQVIRGMC LDFSSPSSSIMEDNEDDCEIAKTPQKNVFGFATSIDESCYEGGDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02800			unknown protein		Potri.002G053100 [exp]	0	1
					Potri.006G190400 [exp]	1.00	0.9863
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.008G093800 [exp]	1.41	0.9849	SNAP30.2
AT4G32830		ATAUR1	ataurora1 (.1)		Potri.006G235000 [exp]	2.44	0.9839
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	3.16	0.9824
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.001G254500 [exp]	3.46	0.9835	UBC19.2
AT3G02120			hydroxyproline-rich glycoprote...		Potri.017G094200 [exp]	3.74	0.9796
AT1G66250			O-Glycosyl hydrolases family 1...		Potri.004G086400 [exp]	4.12	0.9735
AT2G20590			Reticulon family protein (.1.2...		Potri.007G137700 [exp]	4.24	0.9778
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.002G010000 [exp]	4.24	0.9810
AT4G02800			unknown protein		Potri.005G209400 [exp]	4.69	0.9769

Compare expression of checked genes

Potri.002G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.