Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02810 71 / 7e-14 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT1G03170 60 / 2e-10 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT5G19260 59 / 6e-10 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT1G54740 50 / 8e-07 Protein of unknown function (DUF3049) (.1) AT3G06020 46 / 2e-05 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT5G22090 44 / 0.0001 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209100 [exp] 341 / 5e-118 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 136 / 1e-37 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 125 / 2e-33 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.004G144000 [exp] 56 / 2e-09 AT5G22090 45 / 6e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.005G037600 [exp] 51 / 3e-07 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 51 / 6e-07 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 50 / 1e-06 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.013G027100 [exp] 47 / 5e-06 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 41 / 0.0007 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042576 [exp] 94 / 2e-22 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 90 / 5e-21 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 85 / 8e-19 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 75 / 3e-15 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 74 / 6e-15 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 71 / 5e-14 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 65 / 6e-12 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 51 / 6e-07 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 50 / 9e-07 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10035353 [exp] 45 / 3e-05 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.002G053400.1 pacid=42777892 polypeptide=Potri.002G053400.1.p locus=Potri.002G053400 ID=Potri.002G053400.1.v4.1 annot-version=v4.1 ATGTCCTCCTCAAGTTATTGTCCAGGCCTCCAATCATGCCTAGAGCCGGTCTACCTCGTCGAACCACGTGTTTTGAGGCTCAAATTGGCTCCATCCAAAT CCAACATTTCTCGCTCTTCAACAATTTGCAAGCCTTTTGTCACTAACTCAGACCGTGACTTGGAAAACAACAAAAATGCTGACACGGGTGGCTGGAGTTT CCTCCAGTCTATTGCTAACAATACCTCTCAAACCACCACAGAAAAGAACGACAAAGTCTATGTCCCTCCAAATTTTAAGAGCTCTTCTTCTATGCTCAGC GAAAAGAGCTTAGAAATGTGCACCGAGGGCCTGGGGAGTGAAACTGGTAGCGAGGGGAGCGAAAGCAGAGATGGGATGGCTTTCCTGTCATTAGAAAACG TGGATCATGAGACTAGGGCAGCACCAAAATTGCGCGAAACAAGAACAACGAGTCGAAGTGTTAGCTTCCCACCTCCTTTGAGCTCGATTAGTGGCTCCAA CAATGTTCGAGTGAGGCCTCACCGAGAAGGTGGAAGGCTAGTCTTGGAAGCAGTAACCGTCTCTTCTTGCCACGTTCATTTACATGCAGAGAGAACCGAT GGCCGGCTTCGGCTACATTTGATGAAGGACAGCTCTCCTAATAACTTCGACAATGAAGTGCAAGAAGCAGAAGCAGAATATGGTGAGGAAGTTGTTGTTC AAGATGACGATGGTGATGATCAAAGTGGAGATGATGAAGCTGGTGGTGGTGGTGATATTTGCGGAGAGGAGTTGGAGGGTATTAATGGAAGTGTTGGGGG TGAAATGGGGATGGGGAAATTAGCTAGACCAGGCAGGTGCAAGCAAAGTGGGAGTAGCAACGAAGGCTTACTTAATTGGGAGCCATTTTGGGTGGCCACT TAG
AA sequence Show only first row Show all	>Potri.002G053400.1 pacid=42777892 polypeptide=Potri.002G053400.1.p locus=Potri.002G053400 ID=Potri.002G053400.1.v4.1 annot-version=v4.1 MSSSSYCPGLQSCLEPVYLVEPRVLRLKLAPSKSNISRSSTICKPFVTNSDRDLENNKNADTGGWSFLQSIANNTSQTTTEKNDKVYVPPNFKSSSSMLS EKSLEMCTEGLGSETGSEGSESRDGMAFLSLENVDHETRAAPKLRETRTTSRSVSFPPPLSSISGSNNVRVRPHREGGRLVLEAVTVSSCHVHLHAERTD GRLRLHLMKDSSPNNFDNEVQEAEAEYGEEVVVQDDDGDDQSGDDEAGGGGDICGEELEGINGSVGGEMGMGKLARPGRCKQSGSSNEGLLNWEPFWVAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02810		FAF1	FANTASTIC FOUR 1, Protein of u...		Potri.002G053400 [exp]	0	1
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.002G039400 [exp]	2.44	0.9682
AT1G15190			Fasciclin-like arabinogalactan...		Potri.001G306800 [exp]	2.82	0.9266
AT4G22360			SWIB complex BAF60b domain-con...		Potri.016G013400 [exp]	3.74	0.8916
AT1G02460			Pectin lyase-like superfamily ...		Potri.002G190600 [exp]	4.00	0.8804
AT2G15180			Zinc knuckle (CCHC-type) famil...		Potri.001G006850 [exp]	4.24	0.9449
AT3G09510			Ribonuclease H-like superfamil...		Potri.004G015067 [exp]	4.58	0.9385
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.003G106800 [exp]	5.09	0.8920	Pt-SWI1.2
AT5G12220			las1-like family protein (.1.2...		Potri.009G067800 [exp]	5.47	0.9127
					Potri.001G282604 [exp]	6.70	0.9259
					Potri.014G104750 [exp]	7.41	0.9055

Compare expression of checked genes

Potri.002G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.