Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02830 99 / 4e-26 unknown protein AT5G59050 59 / 2e-10 unknown protein AT3G54000 54 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208800 [exp] 308 / 1e-108 AT4G02830 99 / 4e-26 unknown protein Potri.006G093000 [exp] 77 / 2e-16 AT3G54000 79 / 9e-16 unknown protein Potri.016G105000 [exp] 69 / 8e-14 AT3G54000 73 / 4e-14 unknown protein Potri.009G038600 [exp] 65 / 2e-12 AT5G59050 112 / 3e-28 unknown protein Potri.010G195800 [exp] 61 / 4e-11 AT3G54000 94 / 3e-21 unknown protein Potri.008G062200 [exp] 53 / 3e-08 AT2G39870 90 / 9e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042573 [exp] 103 / 1e-27 AT4G02830 66 / 2e-13 unknown protein Lus10014664 [exp] 79 / 5e-18 AT4G02830 74 / 2e-16 unknown protein Lus10021105 [exp] 61 / 5e-11 AT3G54000 90 / 8e-20 unknown protein Lus10040247 [exp] 54 / 2e-08 AT2G39870 100 / 9e-24 unknown protein Lus10001626 [exp] 52 / 5e-08 AT5G59050 77 / 4e-16 unknown protein Lus10001433 [exp] 49 / 9e-07 AT5G59050 80 / 9e-17 unknown protein Lus10004675 [exp] 48 / 1e-06 AT2G39870 100 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G053700.1 pacid=42777151 polypeptide=Potri.002G053700.1.p locus=Potri.002G053700 ID=Potri.002G053700.1.v4.1 annot-version=v4.1 ATGGCTGGTATTGAAGATGGAGAAGTTGTGCTGGAAGAAGCAATTTCATGGCTTCCTTCTCATATTGTTCTAGATCACGAGGCTTTATGGGACTCCAAGG ATTATGTGAGGCACCAACCGCATCACCACCATCAATATCGCAGTCTTCCTAGATTGCCTCTAGACCAGCATCCACAGCGCACAAAACCCAGCCCAGGACC GAATTGCCGAGCAAAATACGCCACTAATTGGGCATCAGGGGGACCTGGAATGCAGGCTGTTTTCCTAGATTCTGGTAAAAAATCATCTGGGACTGGAGTT TTTCTTCCACAAGGGGCAGGCACCAACATGCAATCTAGGAAGAAGCCAGCTTGCGCTCGTGTTCTCCTTCCTGCACGGGTTGTTCAAGCTCTTAATCTCA ACGTGCATGAAATAGGCTTGCACATAACACGCCGGCAAGATGCCAAGAATAAATCGAAAGGCAGAGACTGCAAATCTTTCAAGAATAAAAATAGCAAGGA TGTATCAACACAATGTAGTGTTGTATCAAATAACGAGAATTCGTCGCCAGCGACTTTTCTTCCCGAAGAGTGGACTTACTAA
AA sequence Show only first row Show all	>Potri.002G053700.1 pacid=42777151 polypeptide=Potri.002G053700.1.p locus=Potri.002G053700 ID=Potri.002G053700.1.v4.1 annot-version=v4.1 MAGIEDGEVVLEEAISWLPSHIVLDHEALWDSKDYVRHQPHHHHQYRSLPRLPLDQHPQRTKPSPGPNCRAKYATNWASGGPGMQAVFLDSGKKSSGTGV FLPQGAGTNMQSRKKPACARVLLPARVVQALNLNVHEIGLHITRRQDAKNKSKGRDCKSFKNKNSKDVSTQCSVVSNNENSSPATFLPEEWTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02830			unknown protein		Potri.002G053700 [exp]	0	1
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	3.16	0.9781	Pt-GAS1.1
					Potri.001G248708 [exp]	4.47	0.9747
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	6.70	0.9690
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	10.39	0.9695
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.010G140000 [exp]	12.68	0.9675
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.004G081300 [exp]	13.41	0.9597
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.013G074000 [exp]	13.49	0.9551
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	16.73	0.9549	Pt-ATNAC3.2,NAC036
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G055900 [exp]	16.97	0.9390
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G100801 [exp]	17.14	0.9470

Compare expression of checked genes

Potri.002G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.