Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UVH6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03190 1410 / 0 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT1G20720 181 / 3e-47 RAD3-like DNA-binding helicase protein (.1) AT1G79950 168 / 4e-43 RAD3-like DNA-binding helicase protein (.1) AT1G79890 125 / 2e-29 RAD3-like DNA-binding helicase protein (.1) AT1G20750 93 / 3e-19 RAD3-like DNA-binding helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182600 [exp] 161 / 7e-41 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G180200 [exp] 137 / 3e-33 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G008700 [exp] 124 / 5e-29 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014662 [exp] 1442 / 0 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10000652 [exp] 547 / 0 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10011460 [exp] 174 / 5e-45 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011447 [exp] 171 / 4e-44 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 147 / 6e-36 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 144 / 3e-35 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 130 / 1e-30 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037548 [exp] 87 / 2e-17 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06733 [poplar] [flax] DEAD_2 DEAD_2 CL0023 [poplar] [flax] PF06777 [poplar] [flax] HBB Helical and beta-bridge domain CL0023 [poplar] [flax] P-loop_NTPase PF13307 [poplar] [flax] Helicase_C_2 Helicase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G054000.1 pacid=42780002 polypeptide=Potri.002G054000.1.p locus=Potri.002G054000 ID=Potri.002G054000.1.v4.1 annot-version=v4.1 ATGAAGTTTCAAATCGAGGACGTGACCGTATACTTCCCGTACGATCACATATACCCGGAGCAATACTCCTACATGGTGGAGCTAAAGCGTGCACTAGACG CTAAAGGTCACTGCCTGCTTGAAATGCCTACAGGAACGGGAAAGACAATAGCTTTACTATCATTAATCACAAGCTACACTATCTCTAAACCTCAAGGCGC AATCAAGCTAATTTACTGCACTCGCACAGTTCACGAGATGGAGAAAACCCTAGCCGAATTGAAGTTATTGCATAATTATCAAGTCAAGCACCTCGGCCCT GCTGCCAAGATTTTGGCGATTGGATTGTCTTCGAGGAAGAATTTGTGTGTAAATCCTAATGTTTTGGAAGCGAATAATAGGGATTCGGTTGATGCTGCGT GTCGGAAAAGGACTGCGAGTTGGGTTAGGGCTTTGGCCGCGGAGAATCCGAATGTCGAGACTTGTGAGTTTTTTGAAAATTACGAGAGGGCTGCTTCTGG TGCTGTTTTGCCTCCTGGGGTTTATACTCTTCAGGATCTAAGGGCATATGGGAAAGAGAAAGGGTGGTGTCCATATTTTTTGGCAAGGCATATGGTGCAG CTTGCGAATGTAGTGGTTTATAGTTACCAATACTTGCTTGATCCGAAGGTGGCTGGGATTATATCCAAGGAAATGCAGAAGGAATCTGTTGTTGTGTTTG ACGAGGCGCATAATATCGATAATGTATGTATTGAAGCACTTAGTGTTAGTGTGAGGAGGCAAACACTTGATGGAGCATCAAGAAATATCTCAAGGATTGA ACAAGAGATTAACAGGTTCAAGGCCACTGATGCTAATAGACTGCGTGATGAGTACAAGCGGCTTGTTAATGGTTTGGCATTAAGTGGAAACTTACCTGGC TCAGATTCCTGGCTTTCAAATCCTGCCTTGCCTGATGATATTCTGAGGGAAGCAGTTCCTGGAAATATTCGCCGGGCAGAACATTTTTTGCATGTTTTAC GAAGATTGCTCCAGTATCTAACAGTGCGGTTGGATACTGAGAATGTTGAGAAGGAAAGCCCTATTAGCTTTGTTGCCTCCATAAACAACCAAGCTGGAAT CGACCAGAAAACACTAAAGTTTTGTTATGATCGCCTACATTCACTTATGTTGACGTTGGAAATAACTGATACAGATGAGTTCTTGCATGTCCAAACAATA TGTGACTTTGCAACACTAGTGGGGACATATTCTCGTGGATTTTCCATCATAATTGAACCTTTTGATGAGAGAATGCCACATATTCCTGACCCTGTATTAC AGCTCAGTTGCCATGATGCTTCTCTTGCCATAAAGCCCGTGTTTGACCGGTTTCAGTCAGTCGTAATTACATCTGGAACTCTAAGCCCAATTGATCTCTA TCCTCGACTTCTTAATTTCCACCCTGTTGTCAGTCGAAGCTTTAAGATGTCCTTGACAAGAGATTGCATATGTCCAATGGTTCTCACTCGTGGAAGTGAT CAACTTCCAGTGAGTACCAAATTTGATATGAGAAGTGATCCTGGTGTTGTAAGGAATTATGGGAAGCTATTGGTGGAGATGGTTTCTATTGTTCCAGATG GAATTGTGTGCTTTTTTGTGAGTTATTCGTACATGGATGGGATTATCAACACCTGGAATGAAAGTGGACTTCTAAAGGAAATAATGCAACATAAGCTTGT CTTTATTGAGACCCAAGATGTGGTAGAAACTACTTTGGCTCTTGACAACTATCGTAGGGCTTGTGATTGTGGGAGAGGTGCTGTTTTTTTCTCTGTTGCC AGGGGAAAAGTAGCTGAAGGAATAGATTTTGATCGGCATTATGGCAGACTAGTGATCATGTTTGGTGTTCCTTTCCAGTACACCTTAAGCAAGATACTAC TTGCACGGTTGGAGTATCTAAGGGACACATTTCAGATTAAGGAAGGGGATTTCCTAACATTTGATGCCCTGAGACAAGCTGCTCAATGTGTGGGCCGAGT GATCCGGTCAAAGGCTGATTACGGAATGATGATATTTGCTGACAAAAGGTATAGCCGTCATGACAAGCGCTCTAAATTGCCTGGTTGGATTTTGTCTCAT TTACGTGATGCACACCTGAATTTGAGCACTGACATGGCACTGCATATAGCACGCGAGTTTCTTCGGAAGATGGCTCAACCATATGACAAGACTGGTTCTA GCGGTAAGAAAACCCTGTTATCACAAGAAGATTTGGAAAAGATGGATGACAGCGGTAAGCAGGCGATGCTGTATTAA
AA sequence Show only first row Show all	>Potri.002G054000.1 pacid=42780002 polypeptide=Potri.002G054000.1.p locus=Potri.002G054000 ID=Potri.002G054000.1.v4.1 annot-version=v4.1 MKFQIEDVTVYFPYDHIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYTISKPQGAIKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGP AAKILAIGLSSRKNLCVNPNVLEANNRDSVDAACRKRTASWVRALAAENPNVETCEFFENYERAASGAVLPPGVYTLQDLRAYGKEKGWCPYFLARHMVQ LANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLDGASRNISRIEQEINRFKATDANRLRDEYKRLVNGLALSGNLPG SDSWLSNPALPDDILREAVPGNIRRAEHFLHVLRRLLQYLTVRLDTENVEKESPISFVASINNQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTI CDFATLVGTYSRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSD QLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGIVCFFVSYSYMDGIINTWNESGLLKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSH LRDAHLNLSTDMALHIAREFLRKMAQPYDKTGSSGKKTLLSQEDLEKMDDSGKQAMLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	0	1	Pt-UVH6.1
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	8.12	0.6457
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.014G034600 [exp]	8.77	0.6863
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	9.89	0.6799
AT2G25970			KH domain-containing protein (...		Potri.018G055300 [exp]	10.19	0.6417
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	10.24	0.6414	HYP1.1
					Potri.003G157401 [exp]	12.00	0.6593
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	12.72	0.6727
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.001G004800 [exp]	13.85	0.6724
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Potri.016G083100 [exp]	21.16	0.6415
AT3G51390			DHHC-type zinc finger family p...		Potri.005G104800 [exp]	22.36	0.5709

Compare expression of checked genes

Potri.002G054000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.