Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09820 316 / 1e-99 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G63650 210 / 2e-59 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 201 / 1e-55 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00480 152 / 4e-39 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G17880 114 / 3e-26 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 112 / 1e-25 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G01260 105 / 2e-23 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G46760 101 / 5e-22 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 100 / 7e-22 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT5G46830 92 / 3e-19 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208600 [exp] 1073 / 0 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G103600 [exp] 233 / 3e-67 AT5G41315 582 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G128000 [exp] 226 / 6e-65 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G083900 [exp] 226 / 1e-64 AT5G41315 464 / 5e-156 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G159400 [exp] 220 / 1e-62 AT5G41315 483 / 2e-163 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 118 / 6e-28 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 115 / 4e-27 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 116 / 7e-27 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 109 / 1e-24 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022032 [exp] 291 / 2e-90 AT4G09820 181 / 8e-51 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024631 [exp] 226 / 8e-65 AT1G63650 470 / 3e-159 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10032267 [exp] 224 / 8e-64 AT5G41315 487 / 2e-165 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042572 [exp] 183 / 7e-54 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004574 [exp] 118 / 2e-27 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 113 / 1e-25 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 105 / 8e-24 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 104 / 5e-23 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 96 / 1e-20 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005966 [exp] 94 / 9e-20 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G054100.1 pacid=42780173 polypeptide=Potri.002G054100.1.p locus=Potri.002G054100 ID=Potri.002G054100.1.v4.1 annot-version=v4.1 ATGGCTGCCCCGCTTAGTAGTCGCTTGCAGACTATGCTGCAGGCTGCGGTGCAATCTGTACAATGGACTTACAGTCTGTTTTGGCAAATGTGTCCACAAC AAGGGATCTTAGTGTGGGGAGATGGGTATTACAATGGACCAATCAAGACTAGAAAAACAGTGCAGCCAATGGAGGTTAGTACTGAAGAAGCCTCCTTGCA AAGGAGCCAGCAGCTTAGAGAGCTCTACGATTCATTGTCTATAGGAGAGACCAACCAGCCAGAACGGAGGCCTTGCGCTGCCTTGTCACCGGAAGACTTA ACGGAGACTGAATGGTTTTATCTGATGTGTGTGTCCTTCTCTTTCTCTCCTGGTGCTGGGTTACCAGGAAAGGCCTACGATAGGAAACAACATGTGTGGC TGACAGGTGCAAACGATATTGATAGCAAAACTTTCTCTAGAGCTATCCTTGCCAAGAGTGCTGGAGTTCAGACTGTGGTATGCATCCCTCTCCTTGATGG CGTGGTTGAATTTGGAACAACCGACAAGGTGAAAGAGGATCTTGGGTTTATCCAACACGTAAAATCCTTTTTTAGTGACCACCACCACCTTCCTCCGCCA AAACCAGCTTTATCCGAGCACTCCACTTCCAACCCTGCCACCTCATCAGACCATCCTTACTTATATTCTCCACCCATTCCTCCCTTCTATGTGGCTGCAG ACCCACCAGCCAATGCGGGCCAAATGAATGAGGATGATGAAGAAGAAGAAGAAGATGAAGAAGATGACGAGGATGACGAAGAGGACCAGGAGTCAGACTC GGAAGCTGAAACCAGTCGCGAAGCTCTCTTAGAACCGTGTCAGGCTCAAAACCCTCTTCAAGTGGCAGTAGTTGAGCCGAGCGAGTTGATGCAACTTGAG ATGTCTGAGGGTATCAGGCTTGGTTCTCCTGATGATGGATCTAATAATTTGGACGTGGATTTTCCTTTGATTAACCCAGAGAGCCTGATGGATCACCAGA GCCGAGCTGACTCGTTTAGAACGGAGTCTGCCCGGAGGTGGGCGCCAATGTTGCAAGACAACCCTTTCAGTGGTAGCCTTCAACCATCAGCTTCAGGATC GCCTACGCTAGAAGACTTGGCGCAAGAGGACACGCACTACTCCCAAACGGTCTCCACCATCCTCCAAAACCAGACAATTGAGCTTGCAGCAGAGCCATCG CTAAATGCATACGAGGCATACTCCAACCAATCAGCTTTTGCCAAGTGGATGAACCTCACGGATCACTGCCTCAACGTACCAGTCGAGACCACCTCCCAAT GGCTACTAAAGTACATTCTATTTACCGTACCATACCTTCACAGCAAATACCGGGAAGAAAATTCCCCAAAGTCACGTGACGGTGACGCAACCAATAAGTT CCGCAAGGGGACCCCACAAGATGAGCTCAGTGCCAATCACGTGCTGGCCGAACGACGCCGTAGAGAGAAGTTAAACGAGAGGTTCATAATATTAAGGTCG CTAGTGCCATTCGTGACCAAAATGGATAAAGCATCAATATTAGGGGACACGATTGAATACGTGAAGCAATTACTTAAGAAAATTCAGGATTTGGAGGCAT GTAATAAACAGATGGAGAGTGAGCAACGTTCAAGATCGGTGGACCCACCACAGACGATAACTACTTCCACTAGTTTGAAAGAGCAAAATAATGGGATCAC AGTGGTGGACCGGGCTAGGAGTGTTGGCCCAGGATCAGATAAGAGGAAGATGAGGATTGTGGAGGATTATACTACTGGCCGTGCCCAGCCCAAATCGGTG GATTCATTGCCATCGCCAGAGCCGATGGTCGATGTAGAACCGGAGATCAGCGTAGAGGTGTCGATAATAGAGAGTGACGCATTAATAGAGTTGAAATGTG GCTACAGAGAGGGGCTTTTACTTGACATAATGCAAATGCTGAGGGAGCTCAGGATAGAAACTATTGCAGTCCAGTCTTCTTCGAACAATGGGATCTTTGT AGGGGAATTGAGGGCCAAGGTGAAGGAGAATGTTAGTGGAAAGAAGTTGAGCATTGTGGAGGTGAAGAGGGCAATACGTCAAATAATACCCCATGATTGA
AA sequence Show only first row Show all	>Potri.002G054100.1 pacid=42780173 polypeptide=Potri.002G054100.1.p locus=Potri.002G054100 ID=Potri.002G054100.1.v4.1 annot-version=v4.1 MAAPLSSRLQTMLQAAVQSVQWTYSLFWQMCPQQGILVWGDGYYNGPIKTRKTVQPMEVSTEEASLQRSQQLRELYDSLSIGETNQPERRPCAALSPEDL TETEWFYLMCVSFSFSPGAGLPGKAYDRKQHVWLTGANDIDSKTFSRAILAKSAGVQTVVCIPLLDGVVEFGTTDKVKEDLGFIQHVKSFFSDHHHLPPP KPALSEHSTSNPATSSDHPYLYSPPIPPFYVAADPPANAGQMNEDDEEEEEDEEDDEDDEEDQESDSEAETSREALLEPCQAQNPLQVAVVEPSELMQLE MSEGIRLGSPDDGSNNLDVDFPLINPESLMDHQSRADSFRTESARRWAPMLQDNPFSGSLQPSASGSPTLEDLAQEDTHYSQTVSTILQNQTIELAAEPS LNAYEAYSNQSAFAKWMNLTDHCLNVPVETTSQWLLKYILFTVPYLHSKYREENSPKSRDGDATNKFRKGTPQDELSANHVLAERRRREKLNERFIILRS LVPFVTKMDKASILGDTIEYVKQLLKKIQDLEACNKQMESEQRSRSVDPPQTITTSTSLKEQNNGITVVDRARSVGPGSDKRKMRIVEDYTTGRAQPKSV DSLPSPEPMVDVEPEISVEVSIIESDALIELKCGYREGLLLDIMQMLRELRIETIAVQSSSNNGIFVGELRAKVKENVSGKKLSIVEVKRAIRQIIPHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	0	1
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	1.41	0.8543
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.006G133200 [exp]	1.73	0.8503
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	5.65	0.8427
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.002G173900 [exp]	7.48	0.8341
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	8.54	0.8625
AT2G28690			Protein of unknown function (D...		Potri.001G235200 [exp]	9.48	0.8392
AT5G01720			RNI-like superfamily protein (...		Potri.016G128400 [exp]	11.95	0.8073
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	12.96	0.8262	GL2.2
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.004G139900 [exp]	13.03	0.7957
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	14.28	0.8368

Compare expression of checked genes

Potri.002G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.