Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19160 560 / 0 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 558 / 0 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 353 / 3e-119 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 334 / 6e-111 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT1G48880 326 / 2e-107 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT3G62390 317 / 2e-103 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 309 / 2e-100 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G06700 301 / 7e-96 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 298 / 3e-95 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 293 / 2e-93 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203900 [exp] 595 / 0 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.016G074800 [exp] 335 / 1e-111 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.002G195800 [exp] 320 / 5e-104 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 315 / 1e-102 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 312 / 3e-101 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 313 / 3e-100 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 303 / 2e-98 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 303 / 2e-98 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.016G059300 [exp] 307 / 3e-98 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003734 [exp] 556 / 0 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 556 / 0 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10028025 [exp] 551 / 0 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034039 [exp] 520 / 0 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 490 / 7e-172 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10004225 [exp] 328 / 1e-108 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10002430 [exp] 329 / 6e-108 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10021328 [exp] 320 / 8e-106 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 317 / 1e-104 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10013035 [exp] 309 / 1e-99 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.002G054400.2 pacid=42778011 polypeptide=Potri.002G054400.2.p locus=Potri.002G054400 ID=Potri.002G054400.2.v4.1 annot-version=v4.1 ATGCCCAGCAACACCACCACATCTTCTGCTACTCCTCGAGACACAATGACCCACTTGGATTTCTTCAAGAAGCTCAAGAGATTGAACCCTCTTGAGCCTT CTCTTGGCATTCTTGGCTTCTTTTTAGTCACCGTACTCCTCATTTGTTGCTTCTTTTACTTGGATTATAGGAGTGTGACTCGTGGCCTTCGCCACCATGG TATCTCCTGGTCTGGACTTGTTGTACCTTCTTCATCAGAATTAACTGGCGGAGATAGTGGACGGCTAGGATTTCTTGATAAGGGTGGTGATTGGTGTGAT ATTTTTGACGGGAACTGGGTTTGGGATGATAATTATCCTCTGTATCAGAGTCAAGATTGTTCCTTTATAGACGCTGGTTTTAGGTGTTTAGAGAATGGTA GGCCTGATAGCTTCTACACCAAGTGGCGTTGGCAACCCAAATATTGCAACTTGCCCAGATTCGATGCAAGGTTGATGTTGGAAAAGCTGAGGAACCGGAG GCTTGTATTTGTTGGAGACTCAGTTGGAAGGAACCAGTGGGAGTCCCTCCTCTGTATGCTTGCCACTGCTGTTCCTGACAGTTCTATATATGAGGTGAAT GGGAACCCAATTACAAAGCACAGAGGGTTTCTGGCGTTCATGTTCAAGGACTATAATTGCACCCTTGAATATTACAGGGCTCCATTTCTAATTGTACAGG GCCGCCCCCCTGCTGGAGCTCCGAAAGAGGTGAAGTTGACTTTAAGAGTGGATACATTGGACTGGACTTCCCCCAAGTGGAAAGATGCAGATGTTCTAGT TCTTAACTCTGGCCATTGGTGGAATCATGAGAAGACCATAAGAGGGGGTTGTTACTTCCAAGAAGGGGAGAAAGTAAGGATGGAGATGAGTGTTGAAACT GCATATGGAAGATCAATCGAAACTTTGATTGATTGGCTTCACACTGAAGTAAATATGAGCAAGACTCGAGTCTTCTTTCGAACCTATGCTCCTGTACATT TCAGGGGTGGCGACTGGAAGACTGGTGGTAGCTGCCATCTGGAAAAGCTTCCTGACTTAGGCTCGGTGCTGGTTTCACCAGATTACCGTTTCAAACTATT CTTTGATGTGTTATCAAAACACTCAAATGAATCACAAGTGATGAACTTGCATTTGTTGAATGTGACAAGCATGTCAGCCCGGAGAAAGGATGGCCATGCA TCCTTATACTATCTTGGACCAGGTAGTGGTCCAGCCTCCCTACACCGTCAAGACTGCAGCCATTGGTGCCTGCCTGGTGTACCTGATTCCTGGAATGAGC TTCTTTATACACTTCTTTTGAAGCAGGAGTTGGTTCATGCACAAGATTTAACAGAATCTTCTCAAGCTCCTTTTGTGACCGCTTAA
AA sequence Show only first row Show all	>Potri.002G054400.2 pacid=42778011 polypeptide=Potri.002G054400.2.p locus=Potri.002G054400 ID=Potri.002G054400.2.v4.1 annot-version=v4.1 MPSNTTTSSATPRDTMTHLDFFKKLKRLNPLEPSLGILGFFLVTVLLICCFFYLDYRSVTRGLRHHGISWSGLVVPSSSELTGGDSGRLGFLDKGGDWCD IFDGNWVWDDNYPLYQSQDCSFIDAGFRCLENGRPDSFYTKWRWQPKYCNLPRFDARLMLEKLRNRRLVFVGDSVGRNQWESLLCMLATAVPDSSIYEVN GNPITKHRGFLAFMFKDYNCTLEYYRAPFLIVQGRPPAGAPKEVKLTLRVDTLDWTSPKWKDADVLVLNSGHWWNHEKTIRGGCYFQEGEKVRMEMSVET AYGRSIETLIDWLHTEVNMSKTRVFFRTYAPVHFRGGDWKTGGSCHLEKLPDLGSVLVSPDYRFKLFFDVLSKHSNESQVMNLHLLNVTSMSARRKDGHA SLYYLGPGSGPASLHRQDCSHWCLPGVPDSWNELLYTLLLKQELVHAQDLTESSQAPFVTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Potri.002G054400 [exp]	0	1
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.017G142700 [exp]	2.64	0.9428
AT3G46750			unknown protein		Potri.001G243900 [exp]	2.82	0.9545
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	3.31	0.9628
AT1G70900			unknown protein		Potri.008G130700 [exp]	5.65	0.9134
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	6.48	0.9515
AT2G21080			unknown protein		Potri.006G279200 [exp]	6.92	0.9310
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	7.48	0.9515
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.008G142900 [exp]	11.61	0.9463
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.010G030500 [exp]	12.24	0.9153
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	14.49	0.9438	Pt-SIGE.3

Compare expression of checked genes

Potri.002G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.