Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27310 122 / 2e-31 F-box family protein (.1) AT3G44326 110 / 6e-27 F-box family protein (.1) AT2G36090 107 / 3e-26 F-box family protein (.1) AT4G24210 46 / 8e-06 SLY1 SLEEPY1, F-box family protein (.1) AT5G48170 43 / 6e-05 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208200 [exp] 681 / 0 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.001G452000 [exp] 182 / 1e-53 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.004G199300 [exp] 142 / 5e-39 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.009G160700 [exp] 132 / 2e-35 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.006G208400 [exp] 117 / 7e-30 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.002G122300 [exp] 44 / 4e-05 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G022100 [exp] 44 / 4e-05 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.014G165700 [exp] 41 / 0.0003 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028024 [exp] 589 / 0 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10003731 [exp] 584 / 0 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10021330 [exp] 119 / 2e-30 AT2G36090 266 / 2e-87 F-box family protein (.1) Lus10017006 [exp] 115 / 9e-29 AT2G36090 255 / 4e-83 F-box family protein (.1) Lus10013309 [exp] 100 / 2e-23 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10042637 [exp] 45 / 2e-05 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G054500.1 pacid=42779373 polypeptide=Potri.002G054500.1.p locus=Potri.002G054500 ID=Potri.002G054500.1.v4.1 annot-version=v4.1 ATGGCTGTGTCAGTTGCACCTGTTGAGAGCATGGCATCGTTAAGTAGTGATCTGTTCTATGAGATATTGAGGCGTCTTGATGGCCCGACATTGGCCAGTG CAGCTTGTGCCTGTGTTGCGTTCTGTTCCATTTCAAAAGAAGAGAAATTATGGGAAAATGTTTGTTCTTCTATGTGGCCTTCGACCAGCAGGGAAGATGT TAAAAGTTTAATATCGTGTATTGGTGGATTCAGAAAGTTTTATGCAGATTGCTTTCCGCTTATTGTTAACAAGGAAGTGACTGAGTATCAATTGAACGAT CACCTAGAGTATCCTGAAGAATGGACTGAGGCTGAATACTATGGTGATGTTGATGAATTTGAGAGTGTTGCACCATCAGATTTTGTGTCGATTGTTGATA TCAGGTACAAGGATAGAACGATCTGTTCGAAAGTCCTGTGGGGCATCCCTAATGCCAATGAGTTCAATGGTTGGTTTTACAACTGTCCGTTTCGTATTGA TCTTCTTACCTATGCAGCCAGAGATGATGATAATGACGGTGAAGTTTTTCTTTCGGTTTCTGATGGTCTGCCCCCAATTTTATCAATGGAGAAGGAAAGA AAGGATGGAAAGCTATGGACGGAGCTTCGTGATGGGCTTCGGCTTAGTTGGATTGTTGTTAACAAAAAAGTCAAGCAAGCTGCTAATCTTGCTAGCTGGA GCCCTCTCGGTGGGCAAAGGCATTGGCCTACAGACAAGGATTTTGTAATACGCTTTGGATCCGTGCTTTCTGCAAAAGGCATTCTTCCATGCCAGGTAGT AGAATGCATTCTTATCATGAAGTTTAGAGTGATCCATGCCGAGGGAGAGGGTGTTCAGACAACTCTCAAATTAACAGAGCTGAGCATGCAGTTGGAAGAC ATGGAAGGCGCTCATGTCAATGGAAGAAATAGTTTGAATATTCTCAAAAAAGCATTGAGCTGCCACAGGAGCAAAAACTATAGTGAAGTTCTCGAGTCTT GTCATTTGTACTCAAAAGCTCAGAGCGAGTTAAAAGAGGAGAAGATGAGAAACGAAAGCAGGTTAGATAGACTTCGTATAATAAGCGGCATTGCTGCTTT CCTCACATTCTGGTACTACATTTTGTGA
AA sequence Show only first row Show all	>Potri.002G054500.1 pacid=42779373 polypeptide=Potri.002G054500.1.p locus=Potri.002G054500 ID=Potri.002G054500.1.v4.1 annot-version=v4.1 MAVSVAPVESMASLSSDLFYEILRRLDGPTLASAACACVAFCSISKEEKLWENVCSSMWPSTSREDVKSLISCIGGFRKFYADCFPLIVNKEVTEYQLND HLEYPEEWTEAEYYGDVDEFESVAPSDFVSIVDIRYKDRTICSKVLWGIPNANEFNGWFYNCPFRIDLLTYAARDDDNDGEVFLSVSDGLPPILSMEKER KDGKLWTELRDGLRLSWIVVNKKVKQAANLASWSPLGGQRHWPTDKDFVIRFGSVLSAKGILPCQVVECILIMKFRVIHAEGEGVQTTLKLTELSMQLED MEGAHVNGRNSLNILKKALSCHRSKNYSEVLESCHLYSKAQSELKEEKMRNESRLDRLRIISGIAAFLTFWYYIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27310			F-box family protein (.1)		Potri.002G054500 [exp]	0	1
AT2G28410			unknown protein		Potri.009G013800 [exp]	1.41	0.8231
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	2.00	0.8038
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	8.00	0.7949
AT5G03260		LAC11	laccase 11 (.1)		Potri.009G102700 [exp]	8.00	0.7645
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	14.49	0.7150
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	18.00	0.7465
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.010G027100 [exp]	26.15	0.7187	AHP1.1
AT1G21830			unknown protein		Potri.002G083900 [exp]	26.58	0.7661
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	26.72	0.6695
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	28.14	0.7788

Compare expression of checked genes

Potri.002G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.