Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59030 720 / 0 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT3G21690 443 / 7e-152 MATE efflux family protein (.1) AT1G61890 437 / 1e-149 MATE efflux family protein (.1) AT1G11670 415 / 6e-141 MATE efflux family protein (.1) AT4G21910 412 / 8e-140 MATE efflux family protein (.1.2.3.4) AT4G21903 395 / 5e-133 MATE efflux family protein (.1.2) AT5G38030 385 / 2e-129 MATE efflux family protein (.1) AT1G47530 382 / 3e-128 MATE efflux family protein (.1) AT1G12950 382 / 1e-127 RSH2 root hair specific 2 (.1) AT3G26590 381 / 1e-127 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G207600 [exp] 825 / 0 AT3G59030 692 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.005G207500 [exp] 823 / 0 AT3G59030 690 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.014G153100 [exp] 452 / 2e-155 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 450 / 1e-154 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 446 / 4e-153 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 444 / 2e-152 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 442 / 9e-152 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 439 / 2e-150 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 436 / 8e-149 AT3G21690 636 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033596 [exp] 711 / 0 AT3G59030 759 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10017639 [exp] 704 / 0 AT3G59030 755 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10001142 [exp] 447 / 1e-153 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10002067 [exp] 446 / 7e-153 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 441 / 8e-151 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 397 / 6e-134 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 393 / 2e-132 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 390 / 5e-131 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 387 / 3e-130 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 385 / 1e-129 AT1G47530 665 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.002G055100.1 pacid=42776873 polypeptide=Potri.002G055100.1.p locus=Potri.002G055100 ID=Potri.002G055100.1.v4.1 annot-version=v4.1 ATGGGCGAAGAATCAGGGTATCGGCCATTGTTATTAGGACCCGACTCCCGTCTTACAGATTTGTCATCTGGTGCAATTGAAGAATTCTTGGAGCACGGGC CTGTGCCTTTCCGATGGTGGCCGCGTCTTGTTGCATGGGAGTCAAGGGTCCTTTGGCTCCTATCTGGCTCATCTATCATTGTTTCCGTGGCCACTTTCAT GCTTAGTTTCGTGACCCAGATGTTTTCAGGGCATTTGGGTGCATTAGAGCTTGCTGGGGCATCTATTGCCAATGTAGGGATTCAGGGTCTTGCTTATGGA ATAATGTTGGGAATGGCCAGTGCCGTGCAAACTGTCTGCGGCCAAGCCTATGGAGCCAAAAAGTACTCTTCAATGGGCATCATTTGCCAAAAAGCAATTA TATTGCACTTGGGAGCAGCTTTCCTCCTCACATTCCTTTATTGGTTTTCGGGACCAGTGCTGCGAGGTATAGGGCAATCTGACAGCATAGCAGAGCAGGG CCAGATTTTCGCTCGTGGCCTGATACCTCAGCTATATGCATTTGCATTGAGCTGCCCTATGCAGAGGTTTCTCCAAGCTCAGAACATAGTAAACCCTCTA GCATACATGTCTGTTGGGGTATTCCTGCTCCACATTCTTCTTTCGTGGATCGTTGTTTATGTGCTGGAATACGGTCTCCTAGGAGCAGCTCTAACACTGA GTTTCTCTTGGTGGTTGTTTGTCATCATAAATGCGCTTTACATTGTCCTGAGCCCATCTTGCAAGGAAACCTGGACTGGCTTGTCTATCAGTGCTTTCAC AGGAATATGGCCTTATTTTAAGCTTACAGTCTCCTCTGCTGTCATGCTTTGTTTGGAGATATGGTACAGCCAAGGACTGGTGCTTATATCAGGACTTCTC CCTAATCCAACAATATCACTGGACTCTATTTCTATTTGCATGAACTACTTGAACTGGGACATGCAATTTATGCTAGGCCTAAGTGCTGCTACCAGCGTTC GAATAGGCAATGAGCTTGGAGCAGGTCATCCGAAAGTAGCGAAATTCTCGGTGATAGTGGTGAATGCCACTAGCATAATTATTAGTATAATTTTCAGTGC AATCGTTCTGAGTTTTCGAGTTGGATTAAGCAGACTCTTTACAAGTGACACTGCGGTTATAGATGCAGTTTCTAATTTGACTCCCCTGCTTGCCATCTCC GTTTTTTTAAATGGCATTCAGCCTATACTCTCAGGTGTGGCCATTGGGAGTGGATGGCAAGCTATTGTAGCTTATGTTAACCTAGCCACGTATTATGTAA TTGGTCTTCCAATTGGATGTGTTCTTGGCTTCAAAACCAGTTTAGGAGTTGTTGGGATTTGGTCGGGGATGATCACTGGAGTTTTCTTGCAAACAGTAAC TTTAATTATGCTTACTGTCAGAACAAACTGGAATGCTGAGGTTGAAAAAGCAGCAGAACGTTTGAATGTTTCAGCTAACGAAGAGTTCTCCAGCTTGGTG GATACCATTTAG
AA sequence Show only first row Show all	>Potri.002G055100.1 pacid=42776873 polypeptide=Potri.002G055100.1.p locus=Potri.002G055100 ID=Potri.002G055100.1.v4.1 annot-version=v4.1 MGEESGYRPLLLGPDSRLTDLSSGAIEEFLEHGPVPFRWWPRLVAWESRVLWLLSGSSIIVSVATFMLSFVTQMFSGHLGALELAGASIANVGIQGLAYG IMLGMASAVQTVCGQAYGAKKYSSMGIICQKAIILHLGAAFLLTFLYWFSGPVLRGIGQSDSIAEQGQIFARGLIPQLYAFALSCPMQRFLQAQNIVNPL AYMSVGVFLLHILLSWIVVYVLEYGLLGAALTLSFSWWLFVIINALYIVLSPSCKETWTGLSISAFTGIWPYFKLTVSSAVMLCLEIWYSQGLVLISGLL PNPTISLDSISICMNYLNWDMQFMLGLSAATSVRIGNELGAGHPKVAKFSVIVVNATSIIISIIFSAIVLSFRVGLSRLFTSDTAVIDAVSNLTPLLAIS VFLNGIQPILSGVAIGSGWQAIVAYVNLATYYVIGLPIGCVLGFKTSLGVVGIWSGMITGVFLQTVTLIMLTVRTNWNAEVEKAAERLNVSANEEFSSLV DTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.002G055100 [exp]	0	1
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207600 [exp]	1.00	0.9507
					Potri.019G036450 [exp]	2.44	0.8567
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G027600 [exp]	2.82	0.8578	CESA2.3
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207500 [exp]	8.94	0.8554
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.004G105000 [exp]	8.94	0.8550
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.005G229500 [exp]	11.31	0.8408	Pt-DFR.1
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006800 [exp]	11.74	0.7386
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	11.83	0.7530
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.015G041100 [exp]	12.00	0.8517	Pt-MYB.36
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.002G033600 [exp]	12.00	0.8357	DFR1,Pt-DFR.2

Compare expression of checked genes

Potri.002G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.