Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NPG1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43040 1036 / 0 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28600 525 / 8e-178 NPGR2 no pollen germination related 2 (.1) AT1G27460 481 / 3e-161 NPGR1 no pollen germination related 1 (.1) AT3G11540 46 / 7e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259300 [exp] 576 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.008G169500 [exp] 573 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 547 / 0 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.014G016000 [exp] 511 / 9e-173 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 507 / 3e-171 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020725 [exp] 979 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029803 [exp] 959 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 959 / 0 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 959 / 0 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10023748 [exp] 584 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 583 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 553 / 0 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 543 / 0 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 535 / 0 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 529 / 2e-179 AT4G28600 728 / 0.0 no pollen germination related 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.002G055200.6 pacid=42776702 polypeptide=Potri.002G055200.6.p locus=Potri.002G055200 ID=Potri.002G055200.6.v4.1 annot-version=v4.1 ATGGTAAGGAGCCAATCTGCTGATTCCAGTGAGTATGAGGATCAGACACCTTCTCGAGAAGTTTGGGCAAATGGGATTTGCATGAAAACTAGTGAAGTTG AAGCAAAGCTTGATGAGGGAAATATTCAAGAGGCAGAGTCTTCCTTACGTGAAGGGTTATCGCTAAATTTTGAGGAAGCAAGAGCCCTTCTTGGAAGGTT GGAGTATCAACGAGGAAATGTAGAAGCAGCCCTTCATGTGTTTGACGGCATTGATCTCCAGGTTGCTATACAGCGACTGCAACCATCCTTTTCTGAAAAA CAGCCTTCTAGGAAGGGTCGTTCTCGTGGTGACTCACAGCATGCAGTATCACAGCATTCTGCTAGCCTGGTGCTTGAAGCAATATACTTAAAAGCAAAAT CTCTTCAAAAGCTTGGGAGGTTAAATGATGCTGCTCATGAATGTAAAAGGGTGCTTGATGCTGTGGAGAAGATATTCCATCAGGGCATACCTGATGTGCA AGTAGACAACAGATTGCAAGATACTGTTCGTCAAGCTGTAGAGCTCCTTCCAGAGCTCTGGAAGCAGGCGGGTTGCTATCATGAAGCAATGTCAGCTTAC AGACGTGCTCTCCTTAGTCAATGGAACCTTGACGATGATAACTGTTCAAGGATTCAAAAAGCATTTGCAGTGTTTTTGATGCACAGTGGAGTGGAGGCTG GTCCACCCAGCTTAGCTGCACAGGTTGATGGTTCCTATGTTCCTAAACACAATCTGGAAGAGGCAATTTTACTCTTGATGATTCTTGTTAGGAAATTTTA CCTTGGTAAGATTGTATGGGACCCATCAGTTTTGGAGCACCTTACATTTGCACTATCTCTATGTGGCCAAACTTTTGTTTTGGCGAAGGAACTTGAGGAG ATCATGCCCGGGGTGTTTCATCGTGTTGACCGTTGGAATACTTTAGCTCTTTGTTACAGTGCAGTAGGACAGAACAAAGCAGCTTTAAACCTTTTGAGGA AGTCTCTACACAAACATGAACAACCTGATGATCTCATTGCACTCTTGTTGGCTGCCAAGATCTGCAGCGAAGATTGTCATCTTGCCGCAGAGGGTGTGGG ATATGCACAAAGAGCTATTACTAATGCTCAAGGGCGCAATGAGCATCTAAAAGGTGTGGCCATTCGAATGCTAGGTCTTTGTTCGGGAAAGCAGGCTACT ACTTCTCCATCTGATTTTGAAAGGTCCCGTCTTCAGTCTGAAGCCTTGAAATTATTGGATGCTGCAATATCTTTGGAGAAAAACAATCCTGATCTGCTTT TTGAGTTGGGAATGCTGTATGCAGAGCAACGGAATTTGAATACTGCTCTGCGCTATGCAAAGCGGTTCATTGATGCAACTGGTGGCTCTTTGCTAAAAGG CTGGAGGTTACTTGCTCAGATTTTGTCTGCTCAGCAGCGATTCTCAGAGGCTGAGGTGGTAATTGATGCTGCTTTGGACGAGACTGCAAAATGGGAGCAA GGACCATTGCTTAGGCTGAAAGCAAAATTGAAGACCTCCCAGTCTCTGCCCATGGATGCAATTGAAACTTACCGCTACCTTCTTGCATTGGTTCAAGCAC AAAGGAAGTCTTTTGGTCCTCTTAGAAGTGTTTCTCAGGCTGGGGATGATAGAGTGAATGAATATGAAGTTTGGCATGGCCTAGCTGATTTGTATTCTCG GCTTTCACATTGGAAGGACATGGAGGTGTGTCTGGGAAAAGCCAGAGAGTTGAAACAGTACTCTGCAGAAGTTCTTTACACAGAAGGTGTTATGCTCCAA GGACGTGGACAAGTTGAAGAAGCCATGTCTGCTTATATTAATGCTCTTTTATTAGACCCATCATTTGTGCGTTGCAAGATACTGATTGGTGCCTTGTTAT CCAAGAGGGACTCCAATGCATTGCCTGTTGCAAGAAGCATACTCTCAGATGCCTTGAAGATAGAACCTACCAACCGAATGGCTTGGTATTACCTGGGGAT AATTCATAGAGTTGATGGACGGATAGCTGATGCCGCAGACTGCTTCCAAGCAGCCTCCATGCTTGAAGAATCTGATCCCATTGAAAACTTCAGTTCTATT CTTTGA
AA sequence Show only first row Show all	>Potri.002G055200.6 pacid=42776702 polypeptide=Potri.002G055200.6.p locus=Potri.002G055200 ID=Potri.002G055200.6.v4.1 annot-version=v4.1 MVRSQSADSSEYEDQTPSREVWANGICMKTSEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGRLEYQRGNVEAALHVFDGIDLQVAIQRLQPSFSEK QPSRKGRSRGDSQHAVSQHSASLVLEAIYLKAKSLQKLGRLNDAAHECKRVLDAVEKIFHQGIPDVQVDNRLQDTVRQAVELLPELWKQAGCYHEAMSAY RRALLSQWNLDDDNCSRIQKAFAVFLMHSGVEAGPPSLAAQVDGSYVPKHNLEEAILLLMILVRKFYLGKIVWDPSVLEHLTFALSLCGQTFVLAKELEE IMPGVFHRVDRWNTLALCYSAVGQNKAALNLLRKSLHKHEQPDDLIALLLAAKICSEDCHLAAEGVGYAQRAITNAQGRNEHLKGVAIRMLGLCSGKQAT TSPSDFERSRLQSEALKLLDAAISLEKNNPDLLFELGMLYAEQRNLNTALRYAKRFIDATGGSLLKGWRLLAQILSAQQRFSEAEVVIDAALDETAKWEQ GPLLRLKAKLKTSQSLPMDAIETYRYLLALVQAQRKSFGPLRSVSQAGDDRVNEYEVWHGLADLYSRLSHWKDMEVCLGKARELKQYSAEVLYTEGVMLQ GRGQVEEAMSAYINALLLDPSFVRCKILIGALLSKRDSNALPVARSILSDALKIEPTNRMAWYYLGIIHRVDGRIADAADCFQAASMLEESDPIENFSSI L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43040		NPG1	no pollen germination 1, tetra...		Potri.002G055200 [exp]	0	1	Pt-NPG1.1
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.001G090600 [exp]	3.31	0.9201	ADL1.1
AT4G35320			unknown protein		Potri.004G207500 [exp]	9.21	0.8571
AT1G52630			O-fucosyltransferase family pr...		Potri.003G062600 [exp]	9.53	0.8969
AT4G12650			Endomembrane protein 70 protei...		Potri.014G172200 [exp]	13.85	0.9086
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	14.62	0.9118
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G099800 [exp]	14.89	0.9000	Pt-CHI.3
AT2G35120			Single hybrid motif superfamil...		Potri.015G122500 [exp]	18.00	0.9047
AT4G27720			Major facilitator superfamily ...		Potri.015G008100 [exp]	18.49	0.8977
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.006G240200 [exp]	19.33	0.8316
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.010G157600 [exp]	19.97	0.8864

Compare expression of checked genes

Potri.002G055200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.