Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43010 177 / 8e-50 bHLH SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 (.1.2) AT3G59060 174 / 8e-49 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT1G09530 145 / 2e-37 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G20180 123 / 2e-30 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT2G46970 109 / 8e-26 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1) AT4G36930 108 / 2e-25 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 101 / 2e-24 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G28790 101 / 4e-23 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G00050 100 / 9e-23 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G28815 96 / 1e-21 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G207200 [exp] 761 / 0 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.002G252800 [exp] 208 / 3e-60 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.005G001800 [exp] 150 / 2e-38 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.013G001300 [exp] 145 / 5e-37 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.014G111400 [exp] 122 / 2e-29 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.005G139700 [exp] 111 / 2e-26 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G124400 [exp] 107 / 1e-25 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 103 / 2e-24 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 97 / 2e-21 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029805 [exp] 199 / 2e-57 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 182 / 6e-49 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10022833 [exp] 170 / 7e-46 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 156 / 4e-41 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10024811 [exp] 114 / 1e-27 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041592 [exp] 99 / 2e-23 AT4G36930 106 / 3e-28 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038020 [exp] 102 / 4e-23 AT4G36930 105 / 1e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009261 [exp] 101 / 1e-22 AT4G36930 102 / 7e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 96 / 4e-21 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 94 / 9e-21 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G055400.11 pacid=42777722 polypeptide=Potri.002G055400.11.p locus=Potri.002G055400 ID=Potri.002G055400.11.v4.1 annot-version=v4.1 ATGAATCATTGCATTCCTGATTGGAATCTTGAGGGTGATCTTCCTGTCTCCAATCAGAAGAACCCCATAGAGCCAGACAATGAGCTAGTAGAGCTGCTAT GGCGAAATGGGCAGGTGGTTATGCACAGCCAAACACAAAGAAAACCAAATCCTCACGTTCAAAAACATGATTCACCAACAGTAAGGGGCTATGACTCAAC TCTGAATTCAAGTCATTTGATTCAAGATGATGAGACAGTTTCTTGGATTCATGACCCTCTTGAAGATTCCTTTGAAAAGGAGTTCTGTTCCAATTTTTTC TCCGAATTGCCACCACCGCTTTCTGATCAAATTTCAGAAGAAAAGTCGGCTAAATTTGATGCCTCGAAAACTTCACATCAGCAACAACAACTCAACAACA ACAAGCATCCAGTGGTTCCTGAATTTCCAGGAAACCCAATGCCCCCTCCAAGAATTCAAGTCCAGGAGCAAAATCATATTAGTGTAGGAGGATTTGGTAA AGCTGTTAATGTTAACTTTTCTCAGTTCTCAGCTCCCTTAAAAGTGGGTGATTTTAGATCTTCAAGTCGACAATTTGGAGGACAGGGGTCTGGAGATTTT TCACAAGGAGAGGCCAGGGAGTGCTCGGTGGTGACAGTAGGGTCAAGCAACCAAACTCCACGTGACCGTTTCCTGAGCCGTGCTTCTGGTAATGCTATTG AGACCGGTACAGGCTTGTCTGCCGGACCCTCCATAGATGATCCACGAAAAGTAATCTCCCAGAGCGAGAGAGGCAAAGGTGATCAGACACTTGATCCCAC TGCTACTTCATCATCAGGTGGGTCAGGTAGTAGTTTTGCTAGAACATGTAAGCAATCTGCAGTACCTAGTCGTGGCCAGAAAAGAAAGACCATGGACGCG GAGGAATCTGAGTGCCAAAGTGAGGATGCCGAACTTGATTCAGCAGTGGCAAACAAGCCAGCCAAACGATCAGGATCTACCCGCAGGAGCCGTGCTGCTG AAGTGCATAACCTCTCAGAAAGGAGACGGAGGGATAGAATTAATGAGAAGATGAGAGCATTGCAAGAGCTCATACCTCACTGCAACAAGACAGACAAAGC ATCAATGTTAGATGAGGCAATTGAGTATCTGAAGTCACTTCAATTACAACTTCAGGTAATGTGGATGGGAAGTGGGATTGTCCCAGTGATGTTTCCAGGA GTGCAGCATTTCATGTCCCGCATGGGAATGGGAATGGGAATGGGCCCGCCTCCTTTGCCTTCTATGCAAAATCCTATGCATTTGCCTAGGGTCCCACTTG TTGATCAATCCATTTCTATGACTCCCACACAGAACCAGGCAGTTATTTGCCAAACTCCAGTATTGAATCCAGTTAATTATCAAAATCAGATGCAAAATCC TACTTTCTCTGATCAGTATGCACGTTTCATGGGTTTTCATATGCAAGCTGCTTCTCAGCCCATGAATATGTTCCGGTTTGGCTCGCAAACAGTACAGCAG AACCAAATGATGGCACCACCAAACAGTGGCGGTGGACCCTTGAGTGCTGGAACTGCAGCCAGTGATGCTCCTCCGAGTGGCAAGACGGGTTAA
AA sequence Show only first row Show all	>Potri.002G055400.11 pacid=42777722 polypeptide=Potri.002G055400.11.p locus=Potri.002G055400 ID=Potri.002G055400.11.v4.1 annot-version=v4.1 MNHCIPDWNLEGDLPVSNQKNPIEPDNELVELLWRNGQVVMHSQTQRKPNPHVQKHDSPTVRGYDSTLNSSHLIQDDETVSWIHDPLEDSFEKEFCSNFF SELPPPLSDQISEEKSAKFDASKTSHQQQQLNNNKHPVVPEFPGNPMPPPRIQVQEQNHISVGGFGKAVNVNFSQFSAPLKVGDFRSSSRQFGGQGSGDF SQGEARECSVVTVGSSNQTPRDRFLSRASGNAIETGTGLSAGPSIDDPRKVISQSERGKGDQTLDPTATSSSGGSGSSFARTCKQSAVPSRGQKRKTMDA EESECQSEDAELDSAVANKPAKRSGSTRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGIVPVMFPG VQHFMSRMGMGMGMGPPPLPSMQNPMHLPRVPLVDQSISMTPTQNQAVICQTPVLNPVNYQNQMQNPTFSDQYARFMGFHMQAASQPMNMFRFGSQTVQQ NQMMAPPNSGGGPLSAGTAASDAPPSGKTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.002G055400 [exp]	0	1
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.016G058700 [exp]	1.00	0.8741
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.009G017400 [exp]	10.67	0.8284
AT1G32690			unknown protein		Potri.001G141600 [exp]	11.91	0.8625
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.002G107700 [exp]	13.26	0.7855
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	20.24	0.8335
AT2G46340		SPA1	SUPPRESSOR OF PHYA-105 1, SPA ...		Potri.014G095300 [exp]	20.27	0.8541	SPA1.1
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	24.49	0.8168
AT1G10970		ATZIP4, ZIP4	zinc transporter 4 precursor (...		Potri.018G053300 [exp]	24.65	0.7713
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	30.91	0.8343
AT4G08540			DNA-directed RNA polymerase II...		Potri.002G090900 [exp]	31.65	0.7492

Compare expression of checked genes

Potri.002G055400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.