Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06690 557 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 228 / 1e-71 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 110 / 2e-27 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 108 / 2e-26 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 105 / 2e-25 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 104 / 4e-25 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 100 / 2e-23 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 97 / 2e-22 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G27680 96 / 6e-22 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 67 / 4e-12 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G207000 [exp] 649 / 0 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 569 / 0 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 237 / 2e-75 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 113 / 3e-28 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 112 / 9e-28 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 109 / 5e-27 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 106 / 7e-26 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 105 / 2e-25 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 103 / 1e-24 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016327 [exp] 513 / 0 AT1G06690 510 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10002744 [exp] 501 / 8e-179 AT1G06690 496 / 9e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 126 / 4e-33 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 120 / 5e-31 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10028045 [exp] 107 / 5e-26 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 107 / 6e-26 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 105 / 2e-25 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 105 / 2e-25 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 104 / 5e-25 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 100 / 2e-23 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.002G055500.1 pacid=42778666 polypeptide=Potri.002G055500.1.p locus=Potri.002G055500 ID=Potri.002G055500.1.v4.1 annot-version=v4.1 ATGGCTATGGCTATGGCTATGAACGTTAGTAGTGCATGTTTTTGTGTTTCAAGTAATAGGAGATCAGTTAACAGGGTGAGAGCTGTTGCCTCGGAGGATT TTGCTGCTTCGAAAATAAAGGAAGATAAGGTGCAGTTGGGTGGATCTGATTTAGAGGTTACAAGGCTTGGAATTGGTGCTTGGTCTTGGGGCGATACCAG CTACTGGAACAACTTCGAATGGGATGATATGAAAATGAAGGCTGCTAAAGCAGCTTTTGATACAAGCGTTGATTGCGGTATAACTTTCTTTGATACTGCT GAAGTTTACGGCTCTAGGTTCTCATTTGGTGCCATAAATTCAGAAACTCTTCTAGGAAGATTTATCAAGGACAGGAAAGTAAAAGATCCTGAAGTGGAGG TAGCTGTCGCGACCAAGTATGCAGCTTTGCCTTGGAGGCTGGGACGTCAGAGTGTTCTAACTGCCCTTAAGGAGTCCCTCAATCGCCTTGGACTTTCTTC GGTAGAGCTATATCAACTACATTGGCCTGGAATATGGGGAAATGAAGGATATATTGATGGTCTTGGGGATGCTGTTGAGCAGGGGCTTGTGAAGGCTGTT GGTGTTTCCAATTACAGTGAGAGCCGACTCCGTGCTGCTTATGAGAAGCTTAAGAAAAGAGGTATTCCACTGGCTTCGAATCAAGTGAATTACAGCCTTA TATACAGGGCACCTGAGGAGAATGGTGTGAAGGCAGCCTGTGATGAACTTGGGGTCACTTTGATTGCATATTCTCCTATTGCTCAAGGTGTTCTTACAGG AAAGTATACACCAGAAAATCCACCAACTGGTCCTCGAGGCCAGATTTACACTCCTGAGTTTCTAACAAAGCTCCAACCTCTGTTGAACAGCATCAAAGAA ATAGGACAGAACTACAGTAAAACTCCCACACAGGTAGTGCTGAACTGGCTAGTAGCCCAGGAGAATGTCGTTCCAATCCCAGGGGCCAAGAATGCTGAAC AGGCTGAGGAGTTCGCTGGTGCACTTGGTTGGAGACTCACCAGTGATGAGATCAACGAGCTGCGCTCCCTGGCATTGGAGATAAAACCTGTAATCGGTTT CCCTGTTGAAAAGTTGTAA
AA sequence Show only first row Show all	>Potri.002G055500.1 pacid=42778666 polypeptide=Potri.002G055500.1.p locus=Potri.002G055500 ID=Potri.002G055500.1.v4.1 annot-version=v4.1 MAMAMAMNVSSACFCVSSNRRSVNRVRAVASEDFAASKIKEDKVQLGGSDLEVTRLGIGAWSWGDTSYWNNFEWDDMKMKAAKAAFDTSVDCGITFFDTA EVYGSRFSFGAINSETLLGRFIKDRKVKDPEVEVAVATKYAALPWRLGRQSVLTALKESLNRLGLSSVELYQLHWPGIWGNEGYIDGLGDAVEQGLVKAV GVSNYSESRLRAAYEKLKKRGIPLASNQVNYSLIYRAPEENGVKAACDELGVTLIAYSPIAQGVLTGKYTPENPPTGPRGQIYTPEFLTKLQPLLNSIKE IGQNYSKTPTQVVLNWLVAQENVVPIPGAKNAEQAEEFAGALGWRLTSDEINELRSLALEIKPVIGFPVEKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.002G055500 [exp]	0	1
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.005G085400 [exp]	1.41	0.9761
AT3G46610			Pentatricopeptide repeat (PPR-...		Potri.017G070800 [exp]	2.00	0.9782
AT4G18810			NAD(P)-binding Rossmann-fold s...		Potri.004G061200 [exp]	7.34	0.9701
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	8.30	0.9729
AT4G00030			Plastid-lipid associated prote...		Potri.014G058400 [exp]	8.48	0.9606
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.013G108700 [exp]	8.66	0.9711
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.014G120700 [exp]	9.53	0.9671
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.005G038700 [exp]	10.58	0.9711
AT1G74640			alpha/beta-Hydrolases superfam...		Potri.017G115100 [exp]	13.30	0.9529
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	13.41	0.9625

Compare expression of checked genes

Potri.002G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.