Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-OEE2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06680 381 / 6e-135 PSII-P, OEE2, PSBP-1, OE23 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) AT2G30790 194 / 2e-63 PSBP-2 photosystem II subunit P-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206700 [exp] 485 / 4e-176 AT1G06680 400 / 2e-142 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020717 [exp] 364 / 5e-128 AT1G06680 380 / 2e-134 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Lus10029823 [exp] 355 / 1e-124 AT1G06680 375 / 2e-132 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Lus10030326 [exp] 44 / 7e-05 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 42 / 0.0002 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [poplar] [flax] Mog1p_PsbP PF01789 [poplar] [flax] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Potri.002G055700.2 pacid=42776995 polypeptide=Potri.002G055700.2.p locus=Potri.002G055700 ID=Potri.002G055700.2.v4.1 annot-version=v4.1 ATGGCCTCCACTGCATGCTTCTTGCACCACCATGCACTAACCACTCCTGCCAGATCAACCTCATCATCACAGCGCCAAGTGGTTAACCTCAAGCCCGCCC AGCTGGTTTGCAGGGCACAGAAGCAGGCAGTACAGGAAGAGGATGACGGTGTTGTGTCTCGTAGATTGGCACTCACTGTGCTCATTGGTGCTGCTGCCCT TGGCTCAAAGGTTGCTCCCGCTGATGCTGCCTATGGTGAATCTGCCAATATTTTCGGGAAGCCAAAGACAAACACAGACTTCTTGCCCTACAATGGAGAT GGATTCAAGTTGTCAGTTCCAGCAAAATGGAATCCAAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTGAGATATGAGGACAATTTTGATGCCACCAGCA ACCTTTCTGTCATGGTCACCCCAACTGACACGAAATCCATCGCCGACTACGGTTCCCCTGAGGAATTCCTCTCGAAGGTGGATTACTTGCTTGGAAAACA ATCCTCCTTGTTTGCGACTTCATCTGAGGGTGGTTTCGACACCAATACCGTAGCAACGGCTAACATATTGGAGACCTCAACTCCGGTGATCGATGGGAAA CAATATTACTTCTTGTCAGTGCTGACAAGGACTGCTGATGGAGATGAAGGTGGCAAGCACCAACTTATCACAGCCACTGTGAAAGATGGTAAGCTTTACA TTTGCAAGGCACAAGCTGGAGACAAGAGATGGTTCAAGGGAGCAAGAAAGTTCGTGGAGAGCGCTGCAAGTTCTTTCAGTGTTGCTTAA
AA sequence Show only first row Show all	>Potri.002G055700.2 pacid=42776995 polypeptide=Potri.002G055700.2.p locus=Potri.002G055700 ID=Potri.002G055700.2.v4.1 annot-version=v4.1 MASTACFLHHHALTTPARSTSSSQRQVVNLKPAQLVCRAQKQAVQEEDDGVVSRRLALTVLIGAAALGSKVAPADAAYGESANIFGKPKTNTDFLPYNGD GFKLSVPAKWNPSKEREFPGQVLRYEDNFDATSNLSVMVTPTDTKSIADYGSPEEFLSKVDYLLGKQSSLFATSSEGGFDTNTVATANILETSTPVIDGK QYYFLSVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVESAASSFSVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.002G055700 [exp]	0	1	Pt-OEE2.2
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.001G056700 [exp]	1.73	0.9897
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.008G151600 [exp]	2.82	0.9858	PSAD1.2
AT4G01150			unknown protein		Potri.002G166800 [exp]	3.87	0.9836	CAM2.2
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Potri.014G172400 [exp]	4.47	0.9843	LHCA3*1.1,Lhca3
AT1G74730			Protein of unknown function (D...		Potri.015G065100 [exp]	4.58	0.9809
AT1G74470			Pyridine nucleotide-disulphide...		Potri.012G068801 [exp]	6.00	0.9823
AT5G19940			Plastid-lipid associated prote...		Potri.006G276400 [exp]	6.70	0.9797
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	10.95	0.9790
AT1G03630		PORC ,POR C	protochlorophyllide oxidoreduc...		Potri.013G135500 [exp]	11.48	0.9746	Pt-POR.2
AT1G03600		PSB27	photosystem II family protein ...		Potri.002G056300 [exp]	13.07	0.9693

Compare expression of checked genes

Potri.002G055700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.