Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 716 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 447 / 3e-152 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 131 / 1e-33 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 109 / 4e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 101 / 2e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 86 / 3e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 84 / 1e-16 TAF5 TBP-associated factor 5 (.1) AT5G56130 71 / 3e-13 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 69 / 4e-12 WD-40 repeat family protein / notchless protein, putative (.1) AT1G10580 69 / 6e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206600 [exp] 1019 / 0 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 603 / 0 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 501 / 1e-173 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 446 / 1e-151 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 124 / 3e-31 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 116 / 1e-28 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 104 / 1e-24 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 96 / 2e-21 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 92 / 3e-20 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001046 [exp] 843 / 0 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 800 / 0 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 778 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 773 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 361 / 7e-119 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 359 / 4e-118 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001412 [exp] 233 / 5e-73 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 124 / 2e-31 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 124 / 3e-31 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 116 / 2e-28 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G055800.2 pacid=42779728 polypeptide=Potri.002G055800.2.p locus=Potri.002G055800 ID=Potri.002G055800.2.v4.1 annot-version=v4.1 ATGGGAGGTGTAGAGGATGATGAACCAGCCTCAAAACGCCTGAAATTAGCCTCCGGAAGGTTGACAGGTCTTTCCAACGGTTCATCTTTAACAGAGCCCA TTGTTGGTTCCAGGGATTTGATGGCTCGCCCCCCACAATCTGAAGGGGACAAAGATGTTCTTGGTTCAAAAGGAGTTATTAAAAGAGTTGAATTTGTCAG AATAATAGCCAAGGCGCTGCATTCTCTTGGATATAAGAAAAGCTGTGCTCATTTAGAGGAAGAGTCTGGGATACCATTACATTCATCTGCAGTAGATTTA TTTATGCAGCAAGTTCTCAATGGCAATTGGGATGAAAGTGTAGTCACATTGCATAACATTGGCCTAAAGGATGAAAACATTGTCAAGTCAGCATGTTTTC TGATATTGGAGCAGAAGTTTTTTGAACTTTTGGACGGGGACAATATTGTGGATGCTTTGAAGACATTGAGGACTGAGATTGCTCCTCTCTGCATTAATAA TGGTCGAATTTGTGAACTTTCTTCCTGCATTGTATCTTCTACACATTGCAATTCAGTTGGTTCTTCCAATCAAGACAATGGAAGGATAAAGCCACGATCC AAGCTGCTGGAGGAACTGCAAAAGCTGCTTCCCCCAACAGTTATAATACCTGAGAGCAGATTGGAACATTTAGTTGAACAGGCTCTTACCTTACAACGGG ATGCTTGCTTCTTTCACAACTCGTTGGATAAAGAAATGTCGTTATACTCAGATCATCAGTGTGGGAGAGATCAGATTCCTTCTCGAATTTTGCAGATATT AGAAGCACATTCAGATGAAGTCTGGTTCTTACAATTTTCACATAATGGGAAATACTTAGCTTCATCTTCTAACGATCGATCAGCAATCATATGGGAGATT GATGTAAATGGTGGAGTTTCTTTGAAGCATAGATTATCTGGTCACCAAAAACCTGTCTCCTCTGTTTCATGGAGTCCTGATGACCACCAGATTCTTACTT GTGGGGTGGAGGAGGTTGTCAGGCGCTGGGATGTTTCTTCTGGTGAGTGCCTCCAGGTTTATGAGAAAGTGGGCCTTGGCCTAGTGTCCTGTGGGTGGTT TCCAGACGGGAAATGGATATTTTCTGGCATCAATGATAAGAGCATCTGCATGTGGGAATTGGACGGGAAAGAGGTAGAATGTTGGAAAGGGCAGAAAACT CTGAAGATTTCTGATTTAGAGATAACAAGTGATGGGAAGCAGATTATAAGTATGTGTAGACCGACTGCAATTTTATTGCTTGATAGAGAAGCTAAAGCTG AGAGGGTGATTGAAGAAGATCAAACAATTACTTCATTCTCATTATCAAGAGATAATAGGTTCTTGCTGGTTAATCTTCTGAACCAAGAAATCCATCTGTG GAGTATAGATGGTAACATCAGGCTTGTTGCAAAGTACAAAGGCCATAGGCGTACCCGGTTTGTCATTAGGTCATGTTTTGGGGGACTTGAACAAGCTTTT ATTGCATGTGGTAGTGAAGACTCTCAGGTATATATCTGGCATAGAGGCTCGGGAGATCTTGTAGAGGCATTGCCAGGTCATTCTGGAGCAGTTAACTGCG TGAGCTGGAATCCAGCAAATCCATACATGTTAGCATCTGCTAGTGATGATCGTACCATTCGAATATGGGGCTTGAATTCCCTGCATGTGAAGCACAAGAG TGCTCACAGCAATGGCACCCACTACTGCAATGGAGGAACTTGA
AA sequence Show only first row Show all	>Potri.002G055800.2 pacid=42779728 polypeptide=Potri.002G055800.2.p locus=Potri.002G055800 ID=Potri.002G055800.2.v4.1 annot-version=v4.1 MGGVEDDEPASKRLKLASGRLTGLSNGSSLTEPIVGSRDLMARPPQSEGDKDVLGSKGVIKRVEFVRIIAKALHSLGYKKSCAHLEEESGIPLHSSAVDL FMQQVLNGNWDESVVTLHNIGLKDENIVKSACFLILEQKFFELLDGDNIVDALKTLRTEIAPLCINNGRICELSSCIVSSTHCNSVGSSNQDNGRIKPRS KLLEELQKLLPPTVIIPESRLEHLVEQALTLQRDACFFHNSLDKEMSLYSDHQCGRDQIPSRILQILEAHSDEVWFLQFSHNGKYLASSSNDRSAIIWEI DVNGGVSLKHRLSGHQKPVSSVSWSPDDHQILTCGVEEVVRRWDVSSGECLQVYEKVGLGLVSCGWFPDGKWIFSGINDKSICMWELDGKEVECWKGQKT LKISDLEITSDGKQIISMCRPTAILLLDREAKAERVIEEDQTITSFSLSRDNRFLLVNLLNQEIHLWSIDGNIRLVAKYKGHRRTRFVIRSCFGGLEQAF IACGSEDSQVYIWHRGSGDLVEALPGHSGAVNCVSWNPANPYMLASASDDRTIRIWGLNSLHVKHKSAHSNGTHYCNGGT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08560			transducin family protein / WD...		Potri.002G055800 [exp]	0	1
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	2.82	0.8192
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	5.38	0.8423
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.010G093600 [exp]	13.41	0.7988	SUC3.1
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.008G148100 [exp]	20.19	0.7908	Pt-SUC3.2
AT5G08390			Transducin/WD40 repeat-like su...		Potri.010G255400 [exp]	50.19	0.7828
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Potri.001G356300 [exp]	58.24	0.7138
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Potri.016G079900 [exp]	76.47	0.7415	AFC1.1
AT4G10050			esterase/lipase/thioesterase f...		Potri.019G072900 [exp]	79.82	0.6933
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	91.34	0.7515
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	99.69	0.6739

Compare expression of checked genes

Potri.002G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.