Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03600 202 / 5e-67 PSB27 photosystem II family protein (.1) AT1G05385 46 / 2e-06 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206200 [exp] 253 / 4e-87 AT1G03600 210 / 4e-70 photosystem II family protein (.1) Potri.008G152800 [exp] 44 / 9e-06 AT1G05385 201 / 9e-66 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037438 [exp] 194 / 1e-63 AT1G03600 184 / 4e-60 photosystem II family protein (.1) Lus10006111 [exp] 48 / 6e-07 AT1G05385 202 / 2e-66 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13326 [poplar] [flax] PSII_Pbs27 Photosystem II Pbs27
Representative CDS sequence Show only first row Show all	>Potri.002G056300.1 pacid=42778166 polypeptide=Potri.002G056300.1.p locus=Potri.002G056300 ID=Potri.002G056300.1.v4.1 annot-version=v4.1 ATGGCTTCACCAGCACTCCTGACCCCAGCTTCCAAGCTCAAACCCCTCTCCCCCATCAAACCCAAACCCAACTCCACCGCCCCACTTTCACCACCGCCAA CACCACAGCAGCAGCAACCTCGAAACCACCACGCTCGTCGCCACTTCCTGTCCTTGGCCACCGCAATCCTGACTTCCCCGTTCGTCCTCCCAATCACTCC AGCTTTTGCAGGATCGGATGAGGAGTACGTGAAAGATACAGAGGATGTGATCAACAAGGTTAGAACCACCGTAAACATGGACAAGAACGATCCGAACGTG GCTGATGCAGTGGCTAACCTAAGAGAAACTTCAAACTCTTGGGTGGCAAAGTATAGAAGAGAGAAAGCTTTGCTTGGTCGTGCTTCTTTTCGTGATATGT ATTCGGCTTTGAATGCTGTCACCGGGCATTACGTCAGCTTTGGACCGACCGCTCCCATTCCATCTAAGAGAAGGGCCAGAATTCTTGAAGAGATGGACAC TGCTGAGAAAGCATTATCAAGGGGCAGATAA
AA sequence Show only first row Show all	>Potri.002G056300.1 pacid=42778166 polypeptide=Potri.002G056300.1.p locus=Potri.002G056300 ID=Potri.002G056300.1.v4.1 annot-version=v4.1 MASPALLTPASKLKPLSPIKPKPNSTAPLSPPPTPQQQQPRNHHARRHFLSLATAILTSPFVLPITPAFAGSDEEYVKDTEDVINKVRTTVNMDKNDPNV ADAVANLRETSNSWVAKYRREKALLGRASFRDMYSALNAVTGHYVSFGPTAPIPSKRRARILEEMDTAEKALSRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03600		PSB27	photosystem II family protein ...		Potri.002G056300 [exp]	0	1
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Potri.006G221900 [exp]	2.23	0.9779
AT5G52100		CRR1	chlororespiration reduction 1,...		Potri.015G135400 [exp]	2.64	0.9704
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	6.48	0.9739
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	6.48	0.9757	Lhca6,Pt-LHCA2*1.1
AT5G52970			thylakoid lumen 15.0 kDa prote...		Potri.016G092300 [exp]	10.48	0.9676
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	10.95	0.9734
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	11.66	0.9702
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	11.74	0.9706
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.002G055700 [exp]	13.07	0.9693	Pt-OEE2.2
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Potri.001G075500 [exp]	13.85	0.9636

Compare expression of checked genes

Potri.002G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.