Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45110 517 / 2e-178 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT4G19660 500 / 4e-172 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT4G26120 294 / 1e-91 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT1G64280 286 / 9e-89 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT3G57130 147 / 2e-38 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT2G41370 142 / 1e-36 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G43700 47 / 3e-05 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G66055 46 / 5e-05 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G40160 43 / 0.0005 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206100 [exp] 790 / 0 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 642 / 0 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118500 [exp] 630 / 0 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 540 / 0 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.006G148100 [exp] 375 / 4e-123 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.015G116900 [exp] 175 / 9e-52 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 150 / 2e-39 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 137 / 6e-35 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.015G113466 [exp] 92 / 2e-22 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018289 [exp] 593 / 0 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 592 / 0 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 520 / 8e-180 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10036200 [exp] 425 / 1e-142 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10018756 [exp] 340 / 1e-106 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10024842 [exp] 218 / 5e-65 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 125 / 3e-30 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10035413 [exp] 123 / 1e-29 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10024843 [exp] 51 / 2e-07 AT4G26120 94 / 2e-23 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10041853 [exp] 47 / 5e-05 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0465 [poplar] [flax] Ank PF11900 [poplar] [flax] DUF3420 Domain of unknown function (DUF3420) CL0465 [poplar] [flax] PF12313 [poplar] [flax] NPR1_like_C NPR1/NIM1 like defence protein C terminal
Representative CDS sequence Show only first row Show all	>Potri.002G056500.1 pacid=42776840 polypeptide=Potri.002G056500.1.p locus=Potri.002G056500 ID=Potri.002G056500.1.v4.1 annot-version=v4.1 ATGGAAAGTGCCAATGAAATGACATCTTCTTTGAGTTTCGCTTCATCTTCGTACTTATCAAATGGGTCTAGTATCCACCACGTATCAGCCTCAAATGTTC CTGAGCCTGGTGTAAACCTTGAAAACTTGAGCTTAAACAAGCTTAGTGGCAATCTTGAAAGGCTATTACTTGATAAGGAGTATGATTACAGCGATGCAGA GATTTTTGTCGAGGGCACCCCTGTTGGTGTCCATCGGTGTGTATTGGCTGCCCGTAGTCAGTTCTTTCATGAGCTTTTTAAGAAGGGAAATAACAATTCG ACGAATGGAGATAAACCCAGGTACCTCATGTCTGATTTGGTGCCTTATGGTGGGGTTGGATATGAAGCCTTTCATGTTTTCTTGCATTATTTGTACACTG GAAAGCTTAAGCCATCTCCGCCAGAAGTGTCACGATGTGTTGATGATGCTTGTGCCCATGATGTTTGCCGCCCTGCTATTAATTATGTAGTGGAATTGAT GTGTGCCTCTGCCACTTTTCAGATGAAAGAGCTTGTTTTGCTTTTTCAGCGGCGTCTCCTGAACTTTATTGAGAAGGCTCTTGTTGAAGATGTAATCCCA ATTCTTATGGCTGCTTTCCACTACCAGCTAGACCAGCTCCTCTCTCACTGCATCGAAAGACTTGTAAGATCAGATCTTGATAGCACATGCATAGATAAAG AGCTCCCTGATGAAATTTCAAGTAAAATTAAATTACTTCGCAAAAAATCTCTGCCAGAAGCTGAAAGTAGTGTTGAAGAGGTGGACCCCATACTTGAAAA GAGTTTCAGGAGAATCCACAAGGCATTGGATTCAGACGATGTTGAACTGGTGGAGCTTCTCTTGAGTGAATCTAATTTAACTTTGGATGATGCTTATGCT CTCCATTATGCTGTTGCCTACTGTGATCCTAAGATCGTCAAGGAAGTTCTTAGTTTAGGCTCGGCTGATCTCAATCTCAGGAACTCCAGAGGATATTCAG TGCTTCATGTTGCTGCAAGGCGCAAGGAGCCATCAATCATAATGGCACTACTAACTAGGGGCGCCAGTGCATCAGAAACTACATTGGATGGACAAAATGC AGTTGCAATTTGTCGTAGGTTGACTAGGCCAAAGGATTATAATGAAAACACCAAGCAAGGTCAGGAATCTAACAAAGACAGGATATGCATTGATGTACTG GAGACAGATATGCGAAGAAGGAATTCAATGTCTGCAAACGTCTCAACACTGTCGCCATCGGTAGCTGATGATTTGAGCATGAAGCTGGACTACCTGGAAA ATAGAGTGGCTTTTGCACGATTGCTGTTTCCTGCTGAGGCCAGGCTAGCCATGGACTCTGCAAATGCAAATTCAACCTCAATGTACACTGGCCTTTTGGC ATCAAAATCAAAAGGCTCAAGTGGGGACTTAAGGGAGGTTGATTTGAATGAGACACCCACTGTTCAAGCCAAACGACTCCAGTCGAGACTACAAGCACTG CATAAAACAGTGGAGACAGGTCGGCACTATTTCCCTCATTGCTCGAAAGTGGTTGACAAGTTTCTGGATGATGATATGCCTGATGCACTCTTCCTTGATA AGGGTACTCCAGAAGAGCAGAAAACCAAGAAGATGCGCTTCACGGAACTTAAAGACGATGTGCAGAAGGCGTTTTACAAGGACATGGAGAACAACAACAG ATCTGCCCGCTCATCATCTTCTTCGTCCTCATCTTCTCCAAAAAGCGGTGTAACATACAAGGCTAGGAGAAAGTTCTAA
AA sequence Show only first row Show all	>Potri.002G056500.1 pacid=42776840 polypeptide=Potri.002G056500.1.p locus=Potri.002G056500 ID=Potri.002G056500.1.v4.1 annot-version=v4.1 MESANEMTSSLSFASSSYLSNGSSIHHVSASNVPEPGVNLENLSLNKLSGNLERLLLDKEYDYSDAEIFVEGTPVGVHRCVLAARSQFFHELFKKGNNNS TNGDKPRYLMSDLVPYGGVGYEAFHVFLHYLYTGKLKPSPPEVSRCVDDACAHDVCRPAINYVVELMCASATFQMKELVLLFQRRLLNFIEKALVEDVIP ILMAAFHYQLDQLLSHCIERLVRSDLDSTCIDKELPDEISSKIKLLRKKSLPEAESSVEEVDPILEKSFRRIHKALDSDDVELVELLLSESNLTLDDAYA LHYAVAYCDPKIVKEVLSLGSADLNLRNSRGYSVLHVAARRKEPSIIMALLTRGASASETTLDGQNAVAICRRLTRPKDYNENTKQGQESNKDRICIDVL ETDMRRRNSMSANVSTLSPSVADDLSMKLDYLENRVAFARLLFPAEARLAMDSANANSTSMYTGLLASKSKGSSGDLREVDLNETPTVQAKRLQSRLQAL HKTVETGRHYFPHCSKVVDKFLDDDMPDALFLDKGTPEEQKTKKMRFTELKDDVQKAFYKDMENNNRSARSSSSSSSSSPKSGVTYKARRKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Potri.008G220100 [exp]	1.00	0.9371
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	1.41	0.9325
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.012G056000 [exp]	1.73	0.9194
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	3.74	0.9085
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G381700 [exp]	3.87	0.9141	Pt-SRG1.3
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	4.00	0.9190	Pt-ATCNGC19.3
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	4.00	0.9057
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	4.24	0.8735
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	6.48	0.8822
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	7.41	0.8930	Pt-EIL3.2

Compare expression of checked genes

Potri.002G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.