Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19645 352 / 4e-123 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT1G31300 343 / 2e-119 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G10360 249 / 9e-83 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT1G45010 47 / 5e-06 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206000 [exp] 457 / 6e-165 AT1G31300 348 / 2e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.012G118100 [exp] 357 / 5e-125 AT1G31300 349 / 7e-122 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.015G113200 [exp] 355 / 2e-124 AT1G31300 406 / 3e-144 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.019G133500 [exp] 243 / 2e-80 AT4G10360 281 / 2e-95 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018287 [exp] 353 / 9e-124 AT1G31300 375 / 5e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10038335 [exp] 352 / 6e-123 AT1G31300 375 / 3e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10036199 [exp] 351 / 1e-122 AT4G19645 379 / 6e-134 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10040622 [exp] 328 / 3e-113 AT1G31300 336 / 4e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10034433 [exp] 241 / 3e-79 AT4G10360 321 / 3e-111 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10019130 [exp] 235 / 3e-77 AT4G10360 315 / 7e-109 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [poplar] [flax] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Potri.002G056600.6 pacid=42777866 polypeptide=Potri.002G056600.6.p locus=Potri.002G056600 ID=Potri.002G056600.6.v4.1 annot-version=v4.1 ATGATTGCCATGGCGATGAAATCTTACCAAAGTCATGCTGAGCTGCTGGTGAAGGAATATTTACTAGCTGATCCTTTGATTCCGTACACTTCTATTATAG GTGGCATTTTTGCTTGCAAGATGGTATATGATCTTACCAACTTGTTCAGTGCTGTTTACTTTAAGAGCTATTCCAGCCTCACGAAATCGCAACGTATTGA ATGGAACAACCGCGCCATATCCACTTTTCATGCCGTTTTCATGGCAACGATGTCACTATACTTTGTATTTTGCTCTGACCTTTTCTCTGATCAATGTCCC GGTGGCCTTGTTACATTACAGAGCTCTGCACTGTCTACATTTGCATTGGGGGTTTCTGTTGGTTATTTCATTTCTGACCTTGGGATGATTATATGGTTTT ATCCTTCTCTTGGTGGGATGGAATATGTGATTCATCACTTTCTTTCCATGATTTCTGTGGCATATTCTATGTTGACTGGGGAGGGGCAACTTTATGCCTA CATGGTTCTTATCTCTGAGACAACGACTCCTGGAGTCAATTTGAGATGGTATCTTGACATAGCTGGAATGAAGAGGTCTAAAGCATATCTCGTAAATGGG GTTGTGATATTCTTCGCTTGGTTTGTTGCTAGGATACTCTTGTTTATCTACTTGTTTTACCATGTCTCCCTGCACCAATATCAGGTCAAACAAATGCACG CCTCTGGACAACTCTTAGCACTAGTAGTACCAGTAGTGCTATCTGTCATGAACATGATGTGGTTCTGGAAGATTTTCAAGGGGATGAAAAAGACATTAGC AAAGCGGCACTGA
AA sequence Show only first row Show all	>Potri.002G056600.6 pacid=42777866 polypeptide=Potri.002G056600.6.p locus=Potri.002G056600 ID=Potri.002G056600.6.v4.1 annot-version=v4.1 MIAMAMKSYQSHAELLVKEYLLADPLIPYTSIIGGIFACKMVYDLTNLFSAVYFKSYSSLTKSQRIEWNNRAISTFHAVFMATMSLYFVFCSDLFSDQCP GGLVTLQSSALSTFALGVSVGYFISDLGMIIWFYPSLGGMEYVIHHFLSMISVAYSMLTGEGQLYAYMVLISETTTPGVNLRWYLDIAGMKRSKAYLVNG VVIFFAWFVARILLFIYLFYHVSLHQYQVKQMHASGQLLALVVPVVLSVMNMMWFWKIFKGMKKTLAKRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.002G056600 [exp]	0	1
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	3.74	0.9092
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.012G023900 [exp]	3.87	0.9058
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.002G139600 [exp]	4.47	0.8635
AT5G08391			Protein of unknown function (D...		Potri.017G064301 [exp]	7.74	0.9053
AT1G65780			P-loop containing nucleoside t...		Potri.004G077800 [exp]	8.48	0.8126
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.018G009500 [exp]	8.94	0.8461
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.002G187600 [exp]	9.89	0.8521	Pt-KCO5.2
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.015G132500 [exp]	10.67	0.8185
AT2G34580			unknown protein		Potri.004G132600 [exp]	10.95	0.8395
					Potri.010G182150 [exp]	14.96	0.8243

Compare expression of checked genes

Potri.002G056600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.