Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 554 / 0 PSY PHYTOENE SYNTHASE (.1.2.3) AT4G34640 45 / 7e-05 ERG9, SQS1 squalene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205800 [exp] 707 / 0 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.017G138900 [exp] 556 / 0 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700 [exp] 449 / 9e-158 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 447 / 1e-156 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 417 / 9e-145 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466 [exp] 256 / 5e-85 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081433 [exp] 90 / 6e-21 AT5G17230 144 / 2e-41 PHYTOENE SYNTHASE (.1.2.3) Potri.004G161200 [exp] 42 / 0.0005 AT4G34640 659 / 0.0 squalene synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001416 [exp] 580 / 0 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10001050 [exp] 576 / 0 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10029809 [exp] 517 / 0 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3) Lus10020729 [exp] 515 / 0 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3) Lus10013753 [exp] 437 / 1e-152 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3) Lus10039186 [exp] 436 / 4e-152 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3) Lus10014576 [exp] 71 / 3e-15 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00494 [poplar] [flax] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Potri.002G056800.1 pacid=42779816 polypeptide=Potri.002G056800.1.p locus=Potri.002G056800 ID=Potri.002G056800.1.v4.1 annot-version=v4.1 ATGTCTGGTGCTCTCCTTTGGGTGATTTGTCCCAAAGAGAATGCCGGTTTTGCTGCAACAACTTCGTACAGTTTAGTCCCAAAAATTCGCGCACAAGTAA GAAGTCATAACTCCAAAGGGTGTTCAAGACTCAATTTCTCTTCTGGGGTTTTTGCTGCCGCTTCCCTTTCAAGTGCAGTGGCAAACCCACCAAGATCTTC AGTTGAGAAGGTGTACGAGGTTGTTCTAAAGCAAGCTGCTTTGGTGAAAGAACAGAAAAAAGAGAGAGCTTTGGATGTTAGAAAAGAAAAGGGTCAAACT GATAGTATGACTCGTGGGGATCTGCTGAATGGGGCGTACAATAGGTGTGGCGAGGTCTGTGCTGAGTATGCCAAGACCTTTTACCTGGGCACATTACTGA TGACACCAGAGCGACGAAGAGCTGTCTGGGCAATTTATGTGTGGTGCAGGAGAACTGATGAGCTTGTGGATGGCCCTAATGCATCACATATCACACCCAA AGCTCTCGACAGATGGGAGCAAAGGCTGAATGAACTTTTCGAAGGTCGCCCATATGATATGTACGATGCTGCTCTATCAAACACTGTCTCCAAGTACCCT GTTGATATACAGCCCTTCAAGGACATGATAGAAGGAATGAGAATGGACTTGAAAAAGTCGAGATACAAGGACTTTGATGAGCTTTACCTGTACTGCTATT ATGTTGCCGGGACAGTGGGGCTAATGAGTGTTCCAGTAATGGGAATAGCACCGGAATCCAAGGCCTCAACAGAAAGCGTCTACAATGCGGCTTTAGCCCT TGGGATAGCTAATCAACTAACCAATATACTCAGAGATGTTGGAGAAGATGCTAGGAGGGGAAGAATATATCTCCCACAAGATGAGCTCGCTCAAGCTGGC TTGTCTGATGAAGACATTTTTAATGGGAAAGTGACAGACAAATGGAGGAGTTTCATGAAGGTACAGATAAAGCGTGCAAGAATGTTCTTCGACGAGGCTG AGAAGGGTGTTGCAGAACTCAATGATGCTAGTAGATGGCCGGTATGGGCATCTTTGCTGCTATATAAGCAGATATTAGATTCTATCGAAGCAAATGACTA TGATAACTTCTCAAAGAGAGCTTATGTGGGAAAAACAAAGAAATTTGCATCATTGCCTGTAGCCTATGGTAGAGCACTCATGGGTGGTTCTTCTAAATTC GCCAAGCCAGCAAGTAGTTGA
AA sequence Show only first row Show all	>Potri.002G056800.1 pacid=42779816 polypeptide=Potri.002G056800.1.p locus=Potri.002G056800 ID=Potri.002G056800.1.v4.1 annot-version=v4.1 MSGALLWVICPKENAGFAATTSYSLVPKIRAQVRSHNSKGCSRLNFSSGVFAAASLSSAVANPPRSSVEKVYEVVLKQAALVKEQKKERALDVRKEKGQT DSMTRGDLLNGAYNRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHITPKALDRWEQRLNELFEGRPYDMYDAALSNTVSKYP VDIQPFKDMIEGMRMDLKKSRYKDFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAG LSDEDIFNGKVTDKWRSFMKVQIKRARMFFDEAEKGVAELNDASRWPVWASLLLYKQILDSIEANDYDNFSKRAYVGKTKKFASLPVAYGRALMGGSSKF AKPASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.002G056800 [exp]	0	1
					Potri.015G143150 [exp]	1.00	0.9871
					Potri.002G167500 [exp]	2.00	0.9703
AT3G52740			unknown protein		Potri.004G202900 [exp]	2.44	0.9791
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Potri.001G424700 [exp]	3.46	0.9742
AT3G52740			unknown protein		Potri.009G163900 [exp]	3.46	0.9660
AT5G65620			Zincin-like metalloproteases f...		Potri.009G151300 [exp]	3.74	0.9653
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.015G022100 [exp]	4.47	0.9674
AT3G56010			unknown protein		Potri.008G070700 [exp]	5.47	0.9564
AT1G51920			unknown protein		Potri.001G172850 [exp]	6.48	0.9498
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.016G066100 [exp]	7.00	0.9172	Pt-SPP1.2

Compare expression of checked genes

Potri.002G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.