Plant FIBer expression Database

Potri.002G057000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06660 325 / 5e-106 JASON JASON, unknown protein
AT2G30820 255 / 9e-80 unknown protein
AT1G04030 69 / 4e-12 unknown protein
AT5G44040 45 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G205700
[exp]
753 / 0 AT1G06660 275 / 6e-87 JASON, unknown protein
Potri.002G258501
[exp]
84 / 3e-17 AT1G04030 172 / 1e-48 unknown protein
Potri.013G047700
[exp]
61 / 1e-09 AT1G04030 147 / 1e-39 unknown protein
Potri.010G067300
[exp]
47 / 3e-05 AT2G33400 79 / 1e-16 unknown protein
Potri.008G170600
[exp]
44 / 0.0001 AT2G33400 69 / 2e-13 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020732
[exp]
451 / 8e-155 AT1G06660 310 / 1e-100 JASON, unknown protein
Lus10001051
[exp]
419 / 4e-142 AT1G06660 283 / 6e-90 JASON, unknown protein
Lus10001417
[exp]
337 / 6e-111 AT1G06660 228 / 3e-69 JASON, unknown protein
Lus10003613
[exp]
84 / 3e-17 AT1G04030 211 / 1e-63 unknown protein
Lus10008231
[exp]
76 / 3e-14 AT1G04030 202 / 1e-59 unknown protein
Lus10003912
[exp]
48 / 9e-06 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1)
PFAM info
Representative CDS sequence
>Potri.002G057000.3 pacid=42777549 polypeptide=Potri.002G057000.3.p locus=Potri.002G057000 ID=Potri.002G057000.3.v4.1 annot-version=v4.1
ATGATATGTGCATCGTTGAAGCGTGAAATTGGATTGATTTTGGGAAAGGTGTTGCGGTTTCTTTTTAGATCGTTTTTAAGAGCTATGGGCTGTTTCTTTA
CCTGCTTCCGAACCAAAGACGATCGCTCTAATCGGTCTCGACCGCACGCCATCTCCTCCGATTCTCTTCGATCCAAACCTACTCTTGAAGCTGGGGTGCT
TAAAAATCGTTTATCATCTCTATTTTTATCTGAAGAGAAAGAAGAATCTCCGCGTGGTGATATTGAGAATCCGTGTTTAGGATCCCCACAGATCAATAAG
GGACTCAGGGATGAGGCTAAATTTCTTAAAGCTTGTGGTACTTTGCCAGAGACTCCAACTGAAATTCGGAAAGCTTGCGATAAGTTTAAAGGTTCACCAG
GGCTTGACAAATATTCAGAATCTTCAAAGTTCCATTCATGGCTTCCCAACACATCGATGGAGAAACTTCAGTTGGATAATCAAAATGAAGACTCCCGTAC
TCCGGTTAAACTTTGGGAAGAATTGGGGAAGGGTTCATTTTCTTCTGAGCAGACACCTAGCAGCTGCATGACAAATGTACAATCCAGAGAAGATAGTGAG
TCAGGGAGTCATAAAAGAATGATCAAGGTTCAACCAGATGAGATTGATAACGTTGCTACTGGTGCTCCTTGGCTTTCAGCTACAAAAGTTCAGAGCAGGA
ACAGGTCTGTTCGCTTTGAATGTGATTTTGATACATCTTCCTCTAAAGGGTCGTCTGAAAATGGTTGCCAAGTTCCTAGGAAATATGAATCTCCAGGGAA
TTTGAGTGTTTCAAAGCCTTCTCCTAGACCGACCCCGTTAAAAATTTCAGACGACATGCAAACTCCCGGTACTGTTTTTCCTGCAAACTTGGAAACTCTA
GCAAATGGAAAGACTAGGATCAGGTCCCAATATGTTTATTCGGTCTTGAACCCTGTTGAAAATGCCTCTCAATGGAAGTTACTGAGGGAAGATGATTCTA
ACTCACATGAACAGTCAGGTGAGCTGTTCTCTCTTGAGCAGTCTGAAAGTGCAACTCCTAAACCAGAATGGGGAGTAAAAGAAACATCCTCTGGGAAAGA
TTTGAAGGTGGAAGCGAGCTTGTCTTCTTGGGTCAAACCACCACAATCCACAACTGGTGAAGATAATCCAAATATTGGCACTGCTGCTGGCAAAAATTTT
AGTTCTGGTAGAACTCCTGGGGACAGGCCTATAATTGGAATGGTTGCTGCTCACTGGAATGAGAATGAAGCTTCTCGAATCTCCCCGAAGTGGTGGGATG
GAAATGGAATTCCAAATTCGACAAACAAATATAAAGAGGATCAGAAGGTAAGTTGGCATGCAACACCATTTGAGGAGAGGTTAGAGAAGGCATTGTCTGA
AGAGAGTTTCATCTCACAAAGGAAGCCTATCAGCGGGAGACCCATAGTTTTTGACGAATGCGAGGAAAGTGACACTGCTCTATCTCGTTTGCAAGCTTCA
ACACAAGCCAAGTCAGTTGTTTCGTTCTGA
AA sequence
>Potri.002G057000.3 pacid=42777549 polypeptide=Potri.002G057000.3.p locus=Potri.002G057000 ID=Potri.002G057000.3.v4.1 annot-version=v4.1
MICASLKREIGLILGKVLRFLFRSFLRAMGCFFTCFRTKDDRSNRSRPHAISSDSLRSKPTLEAGVLKNRLSSLFLSEEKEESPRGDIENPCLGSPQINK
GLRDEAKFLKACGTLPETPTEIRKACDKFKGSPGLDKYSESSKFHSWLPNTSMEKLQLDNQNEDSRTPVKLWEELGKGSFSSEQTPSSCMTNVQSREDSE
SGSHKRMIKVQPDEIDNVATGAPWLSATKVQSRNRSVRFECDFDTSSSKGSSENGCQVPRKYESPGNLSVSKPSPRPTPLKISDDMQTPGTVFPANLETL
ANGKTRIRSQYVYSVLNPVENASQWKLLREDDSNSHEQSGELFSLEQSESATPKPEWGVKETSSGKDLKVEASLSSWVKPPQSTTGEDNPNIGTAAGKNF
SSGRTPGDRPIIGMVAAHWNENEASRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKPISGRPIVFDECEESDTALSRLQAS
TQAKSVVSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06660 JASON JASON, unknown protein Potri.002G057000
[exp]
0 1
AT2G29570 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL... Potri.001G247700
[exp]
6.00 0.8900 PCNA.2
AT5G57330 Galactose mutarotase-like supe... Potri.001G037700
[exp]
6.24 0.9136
AT5G47830 unknown protein Potri.002G123400
[exp]
8.94 0.8681
AT5G45750 AtRABA1c RAB GTPase homolog A1C (.1) Potri.011G070300
[exp]
9.79 0.8835
AT1G79500 ATKDSA1, KDSA Aldolase-type TIM barrel famil... Potri.002G061900
[exp]
11.04 0.9005 KDSA.1
AT3G06720 IMPA1, IMPA-1, ... importin alpha isoform 1 (.1.2... Potri.014G124200
[exp]
11.40 0.8846
AT4G18060 SH3 domain-containing protein ... Potri.001G354700
[exp]
12.84 0.8783
AT2G34770 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXY... Potri.011G162000
[exp]
14.69 0.8925 Pt-FAH1.1
AT4G18760 AtRLP51 receptor like protein 51 (.1) Potri.004G059500
[exp]
14.83 0.8785
AT1G15020 QSO2, ATQSOX1 quiescin-sulfhydryl oxidase 1 ... Potri.008G127300
[exp]
17.14 0.8601

Potri.002G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.