Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43000 281 / 6e-95 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 231 / 1e-74 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 220 / 6e-70 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 216 / 2e-67 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G02450 176 / 2e-52 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT1G69490 170 / 3e-51 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G04070 170 / 2e-50 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G61110 166 / 2e-49 NAC ANAC025 NAC domain containing protein 25 (.1) AT2G17040 165 / 3e-49 NAC ANAC036 NAC domain containing protein 36 (.1) AT1G01720 163 / 2e-48 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205400 [exp] 470 / 8e-169 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.001G080900 [exp] 301 / 2e-102 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.007G066300 [exp] 291 / 3e-98 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G098000 [exp] 291 / 4e-98 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.003G149700 [exp] 281 / 2e-94 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.017G082000 [exp] 231 / 1e-73 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 231 / 2e-73 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.003G046700 [exp] 173 / 4e-51 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.011G046700 [exp] 172 / 4e-51 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031189 [exp] 249 / 4e-81 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10038332 [exp] 233 / 1e-75 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10031767 [exp] 230 / 2e-75 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10030478 [exp] 236 / 3e-75 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10036194 [exp] 227 / 1e-73 AT3G12910 224 / 1e-72 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 231 / 2e-72 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10036749 [exp] 230 / 2e-72 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10015367 [exp] 222 / 9e-71 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007263 [exp] 219 / 2e-69 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10037156 [exp] 177 / 1e-53 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G057200.3 pacid=42777055 polypeptide=Potri.002G057200.3.p locus=Potri.002G057200 ID=Potri.002G057200.3.v4.1 annot-version=v4.1 ATGGAGGCCTTGTCAAAGATGAGTAGTTCTGATATTGATCATAACGAGGATGAGGAAGTGATGCTTCCAGGTTTCCGATTTCACCCCACTGATGAAGAGC TTGTTGGGTTCTATCTGCGGCGGAAGGTGGAAAAGAAACCACTTAGGTTTGAACTCATCAAACAGATCGATATCTACAAGTACGATCCATGGGATCTTCC AATTAGCAATGCGGGGGACAGGGAGTGGTACTTCTTCTGCATACGAGGGAGAAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACAGGATCTGGATTT TGGAAGGCCACCGGCATCGACAAGCCCATATATTCAGTCAAAGAACCACATGAGTGCATTGGCCTCAAGAAATCCTTGGTCTACTACCGGGGAAGTGCTG GAAAAGGCACTAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCACCAAACGGGAAGACCACAAACCCTAAGAACATTGCACAAGAAGCTGAGGTTTG GACGCTCTGTCGAATTCTCAAACGAGTCCCGTCCCACAAAAAGTACGCACAGGCAGCAGCAGCAAAGCAGCACCCTATTATTGACTCGAATTCAAAAACA TGCAGCTTTGAATCTGAAATTAGTGCCGAGCAGAATGTGAGTTTTGGAGACTCGTTCGGTCAACGAAATGAAAGGAAGCCTGTCATCATAGATAATCATG TTAACCATGAAAGGAATCACTTTTTTACGGGTGGTCAGTATGATTCGATAACTGAAGCTCCATTTACAGCAGCTTTCCAGAACTTCTGGAATCCAGATGT TGGAGATGATTTCTTTGCTAATGGAAACTGGGATGAACTAAGAACAGTGGTCGAGCTAGGCGCCATTGATCCAGCTCAAGCTTACGACTATTGTAGATAA
AA sequence Show only first row Show all	>Potri.002G057200.3 pacid=42777055 polypeptide=Potri.002G057200.3.p locus=Potri.002G057200 ID=Potri.002G057200.3.v4.1 annot-version=v4.1 MEALSKMSSSDIDHNEDEEVMLPGFRFHPTDEELVGFYLRRKVEKKPLRFELIKQIDIYKYDPWDLPISNAGDREWYFFCIRGRKYRNSIRPNRVTGSGF WKATGIDKPIYSVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTTNPKNIAQEAEVWTLCRILKRVPSHKKYAQAAAAKQHPIIDSNSKT CSFESEISAEQNVSFGDSFGQRNERKPVIIDNHVNHERNHFFTGGQYDSITEAPFTAAFQNFWNPDVGDDFFANGNWDELRTVVELGAIDPAQAYDYCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.002G057200 [exp]	0	1
					Potri.001G427901 [exp]	1.41	0.9626
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.008G103300 [exp]	4.35	0.9229
AT3G52710			unknown protein		Potri.006G212800 [exp]	4.47	0.9523
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	4.69	0.9605
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056400 [exp]	5.09	0.9298
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270400 [exp]	6.00	0.9536
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Potri.001G234700 [exp]	6.48	0.9288
					Potri.001G425366 [exp]	7.74	0.9377
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	8.66	0.9496
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037700 [exp]	11.61	0.9389

Compare expression of checked genes

Potri.002G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.