Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30880 574 / 0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205300 [exp] 809 / 0 AT2G30880 556 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2) Potri.003G001400 [exp] 45 / 0.0002 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020739 [exp] 662 / 0 AT2G30880 620 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2) Lus10029819 [exp] 646 / 0 AT2G30880 607 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain
Representative CDS sequence Show only first row Show all	>Potri.002G057300.1 pacid=42779235 polypeptide=Potri.002G057300.1.p locus=Potri.002G057300 ID=Potri.002G057300.1.v4.1 annot-version=v4.1 ATGACCTCCAATGGAGCTTCCGCGCAGAGAGCAGCAGCGGACACAGAAAATAGTTTGGAGAAGATCAAGCGGCAATTAGCGTCCGGTTCTGGTAGAAACC TGTTGCAAGGCCCACTCCTTAAGCGATCTGAAACTCTGAGGAAATGGAACGAGCGATGGGTGATCTTAGACCCGACGACCGGGAAAATGGAATATAAGAC TAGGAGAAATGAGCCAGCTGTGAAAGGAACGATTATCTTTGACGCGAATAGCACGATCACAGCCTCTCCTGTGAACTTCCATGGACTCCCAAAGTATGAT GGCTGCTGTTTTTATATTGGTACTCCCCAGAAAAACGATTACTTCCTTTGTGCAGAGACTCCTGGTGCAGCTAGAGCTTGGGTAGCAACTTTACATGCTA CTCAGTTGGTTCTAAAGGCTCACAAAGAGGCTGTAGATTCCTTAAGTGGAAGTGGTTCTGCAAAATTAGGAACAGTTGCAGCTGTAGTTGCTGCTGCCAA TTCAATAGCACAGGAATGCTCTAAAGAAATTGAAGCAGCAATGCAGATTTCTTTGAGAAATGCTTTAGGAATGATGAATAATAGGATTATTGATGGTCCG ATGGATGACTTGACAATCATGAAGGAGACGCTGAGAGTCAAGGATGAGGAATTACAGAATCTGGCTCGAGATCTTCGTGCTCGTGATTCAACAATAAGAG ATATAGCGGATAAACTATCTGAGACAGCGGAAGCTGCTGAGACTGCAGCATCTGCTGCTCATATTATGGATGAACAAAGAAGAATTGCTTGTTCTGAAAT TGAGCGGTTATCAAAAGCTTCAGAAAAGCAGTTGGAGTCATCCATGTTGAAGTTAAAAGATTTTGAAGAGAAGATTGTGGCTCTGAGCAAGGAAAGAGAT CAACTGATTAAGCAGAGAGACTCTGCCATTCAGGAGGCAAATTTGTGGCGTTCTGAGATTGCAAAAGCTAGAGAGCGTGCTGTGATATTAGAAGGAGCTG TTGTGAGAGCAGAGGAGAAGGCAAGAGTTGCAGAAGCAGATGTTGAAGCTAGAATAAAGGAGGCTGTGGAGAAGGAGGCAGCTGCCGTGAAGGAGAAGGA GGAGCTTCTAGCATATGCAAATGTGCTACAGGCACAACTTCAAAGGCAGCACCTAGATACAGAGCAAGTTTTCGAGGAGAAGACGGAGACCCCAAATGTT GTTGGTAGAACTCTTCCCTTGACTAAGCATGTGGACATGTCAGATGAGAATGTGGATAAAGCTTGTCTTAGTGTTTCTAGAGCTGTCCCAGCCTCCGGGG AGAGTGTTGTGCACATGGCAGTTGATCAAAGCAACCCCCGGCCAGTTGAAGATGCTGAATGGAGCGATATTCAGGCAACAGAGTCAACAATAGCTGATGT GAGAGAAGTTGCCCCTGAGACAGAAGGAAGCAGCCTGGACATTTCTGTTGTTAGCCCACCTGTAAATAATCATCATGAGCAAGGAGCCAATACCTATCAT CAGCCTTGA
AA sequence Show only first row Show all	>Potri.002G057300.1 pacid=42779235 polypeptide=Potri.002G057300.1.p locus=Potri.002G057300 ID=Potri.002G057300.1.v4.1 annot-version=v4.1 MTSNGASAQRAAADTENSLEKIKRQLASGSGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKTRRNEPAVKGTIIFDANSTITASPVNFHGLPKYD GCCFYIGTPQKNDYFLCAETPGAARAWVATLHATQLVLKAHKEAVDSLSGSGSAKLGTVAAVVAAANSIAQECSKEIEAAMQISLRNALGMMNNRIIDGP MDDLTIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAETAASAAHIMDEQRRIACSEIERLSKASEKQLESSMLKLKDFEEKIVALSKERD QLIKQRDSAIQEANLWRSEIAKARERAVILEGAVVRAEEKARVAEADVEARIKEAVEKEAAAVKEKEELLAYANVLQAQLQRQHLDTEQVFEEKTETPNV VGRTLPLTKHVDMSDENVDKACLSVSRAVPASGESVVHMAVDQSNPRPVEDAEWSDIQATESTIADVREVAPETEGSSLDISVVSPPVNNHHEQGANTYH QP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30880			Pleckstrin homology (PH) domai...		Potri.002G057300 [exp]	0	1
AT3G57990			unknown protein		Potri.016G046900 [exp]	4.69	0.8869
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	5.29	0.8799
					Potri.003G154301 [exp]	8.48	0.8609
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	9.48	0.8779
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.006G081700 [exp]	9.79	0.8625
AT5G59050			unknown protein		Potri.009G038600 [exp]	14.00	0.8732
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	15.16	0.8741
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.003G172100 [exp]	16.61	0.8228
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	18.43	0.8747
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	20.78	0.8740

Compare expression of checked genes

Potri.002G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.