Plant FIBer expression Database

Potri.002G057450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G057450.1 pacid=42777576 polypeptide=Potri.002G057450.1.p locus=Potri.002G057450 ID=Potri.002G057450.1.v4.1 annot-version=v4.1
ATGCCTTCTGGTACAAGTTTGATGGGTATTGAACATATACACAGATCCCTGCGAATAGGTCGTCATATCAACAGAGAAACGTTCTCAAACAGCAGGGTAA
GAAGAGCAAAGGAGGAGCGAGAGAGAGAGCTACACCCTTGTTTCTTCACTTGCAACACGTTCGCCTCCGCCATTTTGCAAGAAGCTGATATAAGCCAAAA
AATGGAATCCCGTGAGATCTTGTACTGTTTGTGTCTGCAACTTGTCTGCTATCTTTCTCATTTCAACACGATTTTGTATCAAACTTCGATGGGTTCCGGT
GAACCATCATCCGTTTCGACATATGAATTGAAAAACTCCAGCAGCTGTCTTCTACTCCCATGA
AA sequence
>Potri.002G057450.1 pacid=42777576 polypeptide=Potri.002G057450.1.p locus=Potri.002G057450 ID=Potri.002G057450.1.v4.1 annot-version=v4.1
MPSGTSLMGIEHIHRSLRIGRHINRETFSNSRVRRAKEERERELHPCFFTCNTFASAILQEADISQKMESREILYCLCLQLVCYLSHFNTILYQTSMGSG
EPSSVSTYELKNSSSCLLLP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G057450
[exp]
0 1
AT2G36220 unknown protein Potri.016G079500
[exp]
8.66 0.8394
AT3G17860 ZIM TIFY6B, JAI3, J... JASMONATE-INSENSITIVE 3, jasmo... Potri.010G108200
[exp]
10.19 0.8056
AT4G26470 Calcium-binding EF-hand family... Potri.001G471100
[exp]
10.81 0.8045
AT5G57660 CO COL5, ATCOL5 CONSTANS-like 5 (.1) Potri.018G096084
[exp]
13.85 0.7955
AT2G01410 NHL domain-containing protein ... Potri.006G111600
[exp]
13.85 0.8370
AT1G36370 SHM7 serine hydroxymethyltransferas... Potri.002G090200
[exp]
14.59 0.8346 SHMT4
AT5G58950 Protein kinase superfamily pro... Potri.005G082200
[exp]
19.44 0.8058 Pt-PK1.1
AT1G07310 Calcium-dependent lipid-bindin... Potri.001G249300
[exp]
20.34 0.8094
Potri.001G077600
[exp]
20.78 0.8204
AT5G66840 SAP domain-containing protein ... Potri.005G136000
[exp]
23.74 0.7285

Potri.002G057450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.