Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06550 592 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 306 / 1e-101 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 293 / 2e-96 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 288 / 8e-95 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 270 / 3e-87 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 266 / 6e-86 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G13360 172 / 1e-49 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 168 / 6e-48 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT5G43280 61 / 1e-10 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16210 56 / 1e-08 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179000 [exp] 286 / 1e-93 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.014G057400 [exp] 279 / 1e-90 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 270 / 4e-87 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G156900 [exp] 265 / 2e-85 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.010G170200 [exp] 265 / 6e-85 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 261 / 7e-84 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 260 / 9e-84 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 260 / 1e-83 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 253 / 6e-81 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020758 [exp] 677 / 0 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 672 / 0 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 291 / 1e-93 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 274 / 1e-88 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 266 / 1e-85 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 256 / 1e-82 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 223 / 4e-70 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 163 / 7e-46 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 144 / 2e-38 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10002583 [exp] 63 / 6e-11 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00378 [poplar] [flax] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.002G057700.1 pacid=42777126 polypeptide=Potri.002G057700.1.p locus=Potri.002G057700 ID=Potri.002G057700.1.v4.1 annot-version=v4.1 ATGGCTCAAGAAGTTGTTAACCCAGAAGAGCAGGTTGTTCTTGGAGAAGAGATAGATCATGTTAGGCTGATCACATTGAACAGGCCTCGTCAATTGAATG TTATTTCATCAAAAGTGGTTTCTCTGCTGGCAGATTTCTTAGAGAAATTGGAAAAAGATGATAACACCAAACTTATATTAATCAAGGGTGCTGGGCGAGC ATTTTCTGCTGGTGGGGATCTAAGAATGTTCTATGATGGCAGGACATCAAAGGATTCTTGTCTTGAAGTGGTTTACAGAATGTACTGGCTTTGCCATCAC ATCCATACTTATAAGAAAACCCAGGTTGCTCTCGTCCATGGAATTTCAATGGGAGGAGGTGCATCATTGATGGTCCCGATGAAGTTTTCAGTCGTCACAG AGAAAACTGTTTTTTCCACTCCAGAAGCAAGTATAGGATTTCATACTGATTGTGGTTTCTCATACATACTATCTCGTCTCCCTGGTCATTTGGGGGAATT CTTAGCCTTGACAGGTGCGAGGCTGAATGGTAAGGAATTGGTCGCTGCTGGAATGGCAACTCATTTTGTCCCATTTGAGAAACTGCCTGAGCTAGAGAAG CGTCTTATAAGCTTGAACTCTGGTGATGAGAATGCAGTGAAATCTGTTATTGAAGAATTTTCTGTGGACATACAGCTTGATGAAGACAGCGTTTTAAACA AGTTGTCAATTATTGATGAGTGCTTTTCAAAGGATACTGTGGTAGATATCATCAAATCATTTGGACTTGAGGCAAGCAAGGATGGAAATGGATGGATAGG TGCAATACTGAAAGGGTTGAAAAGATCATCCCCTACTGGATTGAAAATCACTCTCAGATCGATTCGTGAAGGAAGGAAGCAGACACTGGCTGAGTGTCTT GAGAAGGAATTCAGACTAACAATGAACATACTCCGAACCACCATATCTGCTGATGTCTATGAGGGTATTCGGGCTCTCACCATTGACAAGGATAATGCTC CTAAGTGGGACCCACCAACTTGTGACGAAGTGGATGACTCTAAAGTGGACCTGGTATTCCAGCCGTTCAAAGATAATTTGGAGCTCCAAATTCCTGAAAA CGAAAAGCACAGGTGGGAAGGCAAATATGAACACTCAGCCTATGCTGCTCTAAATGCAACAGAAATAGCAAAATAA
AA sequence Show only first row Show all	>Potri.002G057700.1 pacid=42777126 polypeptide=Potri.002G057700.1.p locus=Potri.002G057700 ID=Potri.002G057700.1.v4.1 annot-version=v4.1 MAQEVVNPEEQVVLGEEIDHVRLITLNRPRQLNVISSKVVSLLADFLEKLEKDDNTKLILIKGAGRAFSAGGDLRMFYDGRTSKDSCLEVVYRMYWLCHH IHTYKKTQVALVHGISMGGGASLMVPMKFSVVTEKTVFSTPEASIGFHTDCGFSYILSRLPGHLGEFLALTGARLNGKELVAAGMATHFVPFEKLPELEK RLISLNSGDENAVKSVIEEFSVDIQLDEDSVLNKLSIIDECFSKDTVVDIIKSFGLEASKDGNGWIGAILKGLKRSSPTGLKITLRSIREGRKQTLAECL EKEFRLTMNILRTTISADVYEGIRALTIDKDNAPKWDPPTCDEVDDSKVDLVFQPFKDNLELQIPENEKHRWEGKYEHSAYAALNATEIAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06550			ATP-dependent caseinolytic (Cl...		Potri.002G057700 [exp]	0	1
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	13.63	0.8385
AT5G20885			RING/U-box superfamily protein...		Potri.006G217000 [exp]	18.08	0.8323
AT2G26600			Glycosyl hydrolase superfamily...		Potri.018G129500 [exp]	26.00	0.7898
AT3G50770		CML41	calmodulin-like 41 (.1)		Potri.007G031900 [exp]	42.98	0.8077
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.004G039100 [exp]	51.14	0.8004
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Potri.016G079900 [exp]	67.74	0.7644	AFC1.1
					Potri.013G156300 [exp]	73.89	0.7943
AT3G48380			Peptidase C78, ubiquitin fold ...		Potri.015G088200 [exp]	76.43	0.7912
AT4G38350			Patched family protein (.1.2)		Potri.002G009600 [exp]	87.26	0.7737
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.001G136100 [exp]	98.31	0.7403	XTR4.2

Compare expression of checked genes

Potri.002G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.