Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VCL1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38020 1275 / 0 EMB258, MAN, VCL1 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204400 [exp] 1567 / 0 AT2G38020 1285 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011325 [exp] 1419 / 0 AT2G38020 1313 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2) Lus10012203 [exp] 1113 / 0 AT2G38020 1021 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04840 [poplar] [flax] Vps16_C Vps16, C-terminal region PF04841 [poplar] [flax] Vps16_N Vps16, N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.002G057800.1 pacid=42779063 polypeptide=Potri.002G057800.1.p locus=Potri.002G057800 ID=Potri.002G057800.1.v4.1 annot-version=v4.1 ATGTCGAACGTCTCTGTCGCGGCTGAATGGCAACTCCTAACAGACCGGTATTACAGAAAACCCGAACTCTACCCAATGCGATGGAAACACATAGACTTAA GCCGTAATAAAGTAGCCTGCGCACCCTTCGGCGGTCCAATCGCTTTAATTCGTGACGATTCCAAAATCGTCCAGCTCTACGCCGAATCCGCCCTCCGAAA ACTCCGAATTTTTAACTCCGCTGGTGTTCTCCTATCTGAAACAGTCTGGAAACACCCAGGCGGCCGATTGATCGGAATGTCATGGACCGAAGACCAAACC CTAATTTGCATAGTCCAGGACGGCACGATCTACCGTTACAACGTCCACGGCGAGTGTCTAGAACCTAATTTCTCCATGGGAAAAGATTGCTTTGAACAGA ATGTGGTGGATTGTGTGTTTTGGGGGAACGGTGTCGTGTGCTTGACGGAAGCTGGGAAGTTATTCTGTGTTCCTGATTTTAAGGAGATTAAGCCTTGCAA GCTCGCAGAAATAGGGGTTGGCGTTGAGGAATTGCCACATTGTATGGCGGTTATAGAACCGCAGTATACGGTTTCGGGTAATGTGGAGGTTTTGTTAGGA GTAGGAAGTGGATTTGTGATTGTTGATGAGGATGAGGTGAGGTTCATTGATGAGGAAAAAGTTGGTGGTGCCGTGCAGAAAATTGCTGTTTCCCACAACG GGAGGTTTTTAGCGTGTTTTATGCATGATGGGAGATTTCTTGTTATGAATACTGAGTTTATAAATTTTACTAATTATCAATGTGAGTCTGCGCTTCCACC GGAGCAGATGGCTTGGTGTGGATTGGATAGTGTGTTGCTTTATTGGGATGATGTGCTTTTGATGGTAGGACCTTCTGGGGATTCTGTATCATATTTTAAT GATGAACCTGTAATTTTTATCCCTGAGTGTGATGGAGTGAGGGTATTGTCAAATACGAGTATGGAGTTTGTACAACTGGTGCCTGATTCTACCGTGTCTA TATTTAAGATAGGAAGCACGTCTCCTGCATCATTGTTGTTTGATGCTTTGGATCATTTTGATAGGCGAAGTGCTAAGGCTGATGAGAATTTGAGATTGAT ACGCTCATCTTTGCCTGAGGCTGTTGAAGCATGTATTGATGCTGCTGGTCATGAATTTGATGTTTCCCGTCAGCGGACGCTGCTAAGAGCTGCGAGCTAT GGTCAAGCCTTTTGCAGCAATTTTAAATGTGACCACATTCAAGAGATGTGCAAAACTTTGCGCGTCTTAAATGCCGTACGTGACCCTGAGATTGGCATCC CTCTAAGTATCGAGCAGTATAAGTTGCTTTCCGCACCCGTTCTGGTTGGTCGTTTGATTAACGCTCACCAACATCTTCTTGCACTGCGGATATCAGAATA CGTAGGATTGAATCAAGAAGAAGTAGTAATGCACTGGGCATGCGCAAAAATAACAGCTTCATTAGCAATTCCTGATGCAGCCCTCCTTGAAATCTTACTT GATAAGCTGAAATTATGCAAGGGCATGTCCTATGCAGCTGTTGCTGCTCATGCAGATAGGAGTGGCCGCCGGAAGTTGGCTGCAATGCTTGTTGATCATG AACCACACTCCTCAAAACAGGTTCCTCTATTGTTAAGTATTGCGGAGGAAGAAACAGCTCTAGTGAAGGCAACTGAAAGTGGTGACACTGACCTTGTTTA TCTTGTCCTATTTCATATCTGGCAAAAGAGTTCAGCCTTGGAGTTTTTTGGAACAATACAAGCCAGAGCCCTTGCTCGTGATTTATTCATAGCTTATGCA CGGTATTATAAACATGAATTCTTGAAGGACTTCTTCCTATCAACAGGACAACTTCAAGAGGTGGCTCTTCTCCTATGGAAAGAATCATGGGAAATAGGGA AAAATTCAATGGCCAGTAAAGGATCCCCACTTCATGGTCCACGCATAAAACTCATTGAAAAGGCCCACGATCTTTTTTCTGAGACCAAGGAACATAACTT TGAGTCAAAAGCTGCTGAAGAACATGCAAAGTTACTGAGAATTCAACATGAGTTAGAAGTCTCTACAAAACAGCCCATTTTTGTAGATTCAAGCATCAGT GATACAATTCGAACATGTATTGCATTGGGAAACCATAGAGCTGCTATGAAAGTGAAAACAGAGTTTAAGGTTTCTGAGAAGAGATGGTATTGGCTTAAAG TTTTTGCTTTGGCAACAATTAGAGACTGGGATGCCCTAGAAAAATTTTCGAAGGAGAAGAGACCACCAAATGGTTTCAGGCCATTTGTGGAGGCATGCAT TGATGCGGCTGAGAAAGGTGAAGCTCTGAAATATATCCCAAAACTTGCAGATCCCAGAGAAAGAGCTGAGGCATATGCTCGGATTGGCATGGCCAAGGAA GCTGCTGATGCTGCTTCTCAGGCAAAAGATGGTGAATTGCTTGGTCGATTGAAATTGAGTTTTGCACAAAATACAGCTGCTTCATCAATTTTTGACACTC TACGAGATCGATTGTCCTTCCAAGGAGTTTCATAG
AA sequence Show only first row Show all	>Potri.002G057800.1 pacid=42779063 polypeptide=Potri.002G057800.1.p locus=Potri.002G057800 ID=Potri.002G057800.1.v4.1 annot-version=v4.1 MSNVSVAAEWQLLTDRYYRKPELYPMRWKHIDLSRNKVACAPFGGPIALIRDDSKIVQLYAESALRKLRIFNSAGVLLSETVWKHPGGRLIGMSWTEDQT LICIVQDGTIYRYNVHGECLEPNFSMGKDCFEQNVVDCVFWGNGVVCLTEAGKLFCVPDFKEIKPCKLAEIGVGVEELPHCMAVIEPQYTVSGNVEVLLG VGSGFVIVDEDEVRFIDEEKVGGAVQKIAVSHNGRFLACFMHDGRFLVMNTEFINFTNYQCESALPPEQMAWCGLDSVLLYWDDVLLMVGPSGDSVSYFN DEPVIFIPECDGVRVLSNTSMEFVQLVPDSTVSIFKIGSTSPASLLFDALDHFDRRSAKADENLRLIRSSLPEAVEACIDAAGHEFDVSRQRTLLRAASY GQAFCSNFKCDHIQEMCKTLRVLNAVRDPEIGIPLSIEQYKLLSAPVLVGRLINAHQHLLALRISEYVGLNQEEVVMHWACAKITASLAIPDAALLEILL DKLKLCKGMSYAAVAAHADRSGRRKLAAMLVDHEPHSSKQVPLLLSIAEEETALVKATESGDTDLVYLVLFHIWQKSSALEFFGTIQARALARDLFIAYA RYYKHEFLKDFFLSTGQLQEVALLLWKESWEIGKNSMASKGSPLHGPRIKLIEKAHDLFSETKEHNFESKAAEEHAKLLRIQHELEVSTKQPIFVDSSIS DTIRTCIALGNHRAAMKVKTEFKVSEKRWYWLKVFALATIRDWDALEKFSKEKRPPNGFRPFVEACIDAAEKGEALKYIPKLADPRERAEAYARIGMAKE AADAASQAKDGELLGRLKLSFAQNTAASSIFDTLRDRLSFQGVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	0	1	Pt-VCL1.3
AT2G32730			26S proteasome regulatory comp...		Potri.004G183675 [exp]	3.00	0.9106
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	5.47	0.9038
AT1G04650			unknown protein		Potri.003G175300 [exp]	6.00	0.9190
AT3G48860			unknown protein		Potri.001G065800 [exp]	6.63	0.9176
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	8.18	0.9275
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.016G065700 [exp]	10.24	0.9175	CPK20,CPK20.2
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	10.95	0.9221
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Potri.005G033400 [exp]	13.07	0.9017	Pt-ANP1.2
					Potri.002G028000 [exp]	13.78	0.8476
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	14.49	0.9046

Compare expression of checked genes

Potri.002G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.