Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30890 190 / 6e-61 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G18260 192 / 6e-59 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT3G25290 52 / 5e-08 Auxin-responsive family protein (.1.2) AT4G12980 52 / 5e-08 Auxin-responsive family protein (.1) AT3G59070 50 / 1e-07 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G47530 50 / 2e-07 Auxin-responsive family protein (.1) AT4G17280 49 / 4e-07 Auxin-responsive family protein (.1) AT3G61750 45 / 1e-05 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G35735 44 / 3e-05 Auxin-responsive family protein (.1) AT2G04850 42 / 8e-05 Auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204300 [exp] 343 / 2e-121 AT2G30890 228 / 7e-75 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.011G080400 [exp] 209 / 2e-68 AT4G18260 254 / 3e-81 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.002G222700 [exp] 56 / 3e-09 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 52 / 7e-08 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 51 / 1e-07 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 50 / 1e-07 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G096600 [exp] 50 / 1e-07 AT5G47530 296 / 1e-97 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 50 / 2e-07 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 50 / 3e-07 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020757 [exp] 248 / 1e-84 AT4G18260 184 / 6e-56 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10007333 [exp] 246 / 6e-83 AT4G18260 204 / 2e-62 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10001162 [exp] 51 / 1e-07 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10006398 [exp] 50 / 2e-07 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10012625 [exp] 50 / 3e-07 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10002274 [exp] 50 / 3e-07 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001736 [exp] 50 / 4e-07 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10010120 [exp] 49 / 4e-07 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012350 [exp] 49 / 8e-07 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10038225 [exp] 46 / 5e-06 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Potri.002G057900.3 pacid=42778346 polypeptide=Potri.002G057900.3.p locus=Potri.002G057900 ID=Potri.002G057900.3.v4.1 annot-version=v4.1 ATGGGATTTCTAATGCCTGTTGGGGTGATCGCTATCAGAATGTCACACAGAGAGGCATGCGGACGACGGCTTAAGATTCTTTTCTATGTTCATTCCATTT CGCAGCAGATGCTTTCTGTACTTCTCTCCACAGCGGGAGCAGTAATGTCTATAAAAAACTTCAACAACTCATTCGACAATCACCATCAACGAATAGGCGT AGGCCTGTATGGTATGGTATGGTTACAAGCACTCATTGGGTTTCTACGACCGAGGAGAGGATCTAAAGGAAGAGGTCTGTGGTTTTTTGTGCACTGGATA ACTGGAACTGCGGTATCTCTTTTGGGAATCGTCAACGTATACACAGGATTACAAGCTTACCATCAGAAAACATCAAGAAGAATACATATTTGGACTATAG TTTTCACCACCGAGGTCTCTTTCATTATTTTCTTTTACCTGTTCCAAGACAAATGGGATTATATACATAAGCAAGGAGTCATTTTGGAACCATTGAGGCC CACTCATCAAGTAATTTCTCCAGGAGAAAAGCAAAAGGGATCAACAACCGAGTCTTGCTGA
AA sequence Show only first row Show all	>Potri.002G057900.3 pacid=42778346 polypeptide=Potri.002G057900.3.p locus=Potri.002G057900 ID=Potri.002G057900.3.v4.1 annot-version=v4.1 MGFLMPVGVIAIRMSHREACGRRLKILFYVHSISQQMLSVLLSTAGAVMSIKNFNNSFDNHHQRIGVGLYGMVWLQALIGFLRPRRGSKGRGLWFFVHWI TGTAVSLLGIVNVYTGLQAYHQKTSRRIHIWTIVFTTEVSFIIFFYLFQDKWDYIHKQGVILEPLRPTHQVISPGEKQKGSTTESC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30890			Cytochrome b561/ferric reducta...		Potri.002G057900 [exp]	0	1
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	1.00	0.9563
AT3G56750			unknown protein		Potri.006G040400 [exp]	2.44	0.9356
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	2.82	0.9385	MYB61.2
AT2G38370			Plant protein of unknown funct...		Potri.016G133300 [exp]	2.82	0.9312
AT2G45340			Leucine-rich repeat protein ki...		Potri.002G147000 [exp]	3.16	0.9306
AT3G25130			unknown protein		Potri.002G246400 [exp]	5.00	0.9369
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	5.09	0.9497
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	5.74	0.9416
AT3G06840			unknown protein		Potri.001G162100 [exp]	9.16	0.9256
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G055900 [exp]	10.24	0.9255

Compare expression of checked genes

Potri.002G057900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.