Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50890 550 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT2G05260 169 / 7e-49 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 155 / 1e-43 Lipase class 3-related protein (.1) AT4G10955 153 / 5e-43 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24220 135 / 6e-36 Lipase class 3-related protein (.1) AT5G24180 135 / 7e-36 Lipase class 3-related protein (.1) AT5G24200 125 / 1e-32 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 118 / 7e-30 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 64 / 1e-11 Lipase class 3-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204100 [exp] 726 / 0 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G141100 [exp] 168 / 1e-48 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G090500 [exp] 167 / 3e-48 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007331 [exp] 514 / 0 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 510 / 0 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10031455 [exp] 502 / 6e-179 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10001506 [exp] 486 / 2e-172 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10001819 [exp] 172 / 5e-50 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003188 [exp] 171 / 1e-49 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023072 [exp] 164 / 9e-47 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 157 / 3e-44 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10022416 [exp] 137 / 1e-37 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10032396 [exp] 0 / 1 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G058100.1 pacid=42779318 polypeptide=Potri.002G058100.1.p locus=Potri.002G058100 ID=Potri.002G058100.1.v4.1 annot-version=v4.1 ATGGCAAACAGTTGTAGTGGTGAAGTACAAGAGAGGGATATGGTGGTGGTTCAAGAAGAAGAAGCACACCCATATGCGTTTCATGTCTCCGGACCTCGAA ATGTGGCTTCTCCTAATTGGAGAGACCTTATCAGTTCTAGTTGGAAGAAAGAGAACTACAAGCGAACTGTATTTTCCTGCTTCATTCAAGCAGTTTACTT GCTTGAAATTGACAGACAAGAGAACAGAACAGAAGAAAATGCGCTAGCTCCAAATTGGTGGCGAGGCTTCAAATACAAATTGACCCAAACCTTAATCGAT GAAAGAGATGGATCTATATTTGGTGCGGTCCTAGAATGGGATCGAGCTGCAGCATTAGCTGACATGGTCCTTATGAGACCCAGCGGAGCACCAAAGGCTG TTTTAGCACTCCGAGGAACATTACTCAAAGGCCCTACAATCCGGAGGGATATTGAGGATGACCTCCGTTTTCTGGCATGGGAAAGTTTGAAAGGTTCTGT CAGATTCAAAGTAGCGTTGGAGGCATTAAAATCAGTTGCTGAAATGCATGGAAGCAGCAATGTATGTGTTGCTGGTCATTCCTTGGGGGCTGGTTTTGCT CTCCAGGTGGGAAAAGCATTAGCTAAAGAAGGTGTGTATGTGGAGGCCCATTTATTTAACCCACCTTCTGTTTCTATGGCAATGAGCTTAAGAAACATAG GAGAGAAGGCTGGGTTTGCTTGGAAGAGATTTAAGTCAATGCTTCCTTCAAACGGTGAAACACAGGCAACCGGTGATGACGGAGAGAAGACCTCTACTTT AGGATTGAGGAGTTGGATACCTCCTTTTGGTTATAAAACTCCTTCTATGGGATTAAAAAATTGGGCGCCTAATTTTTACGTGAACAATAGTGACTACATC TGCTGCTCCTACACTGATCCGGATGGAACTGAAGATAAAAAAGAAGCTGACAAGGAGAATGCAGGTCCTGCAAATGGGCAAGTTGCTGCGAAGCTGTTTG TTATGTCCAAGGGAAAACAGAAGTTTCTTGAGGCTCATGGATTAGAGCAATGGTGGTCTGATGATGTGCAACTTCAACAGGCTCTACATAACAGCAAGCT CATGAGCAGGCAGCTGAAATCGTTGTATACTTTCCCAGCTACACAACCAACACAGCGAATCCCACAATGA
AA sequence Show only first row Show all	>Potri.002G058100.1 pacid=42779318 polypeptide=Potri.002G058100.1.p locus=Potri.002G058100 ID=Potri.002G058100.1.v4.1 annot-version=v4.1 MANSCSGEVQERDMVVVQEEEAHPYAFHVSGPRNVASPNWRDLISSSWKKENYKRTVFSCFIQAVYLLEIDRQENRTEENALAPNWWRGFKYKLTQTLID ERDGSIFGAVLEWDRAAALADMVLMRPSGAPKAVLALRGTLLKGPTIRRDIEDDLRFLAWESLKGSVRFKVALEALKSVAEMHGSSNVCVAGHSLGAGFA LQVGKALAKEGVYVEAHLFNPPSVSMAMSLRNIGEKAGFAWKRFKSMLPSNGETQATGDDGEKTSTLGLRSWIPPFGYKTPSMGLKNWAPNFYVNNSDYI CCSYTDPDGTEDKKEADKENAGPANGQVAAKLFVMSKGKQKFLEAHGLEQWWSDDVQLQQALHNSKLMSRQLKSLYTFPATQPTQRIPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.002G058100 [exp]	0	1
AT5G60390			GTP binding Elongation factor ...		Potri.010G219500 [exp]	5.00	0.7389
AT4G02450			HSP20-like chaperones superfam...		Potri.002G061500 [exp]	6.92	0.7294
AT1G30580			GTP binding (.1)		Potri.001G465900 [exp]	8.00	0.7332
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.001G335700 [exp]	20.49	0.7326	Pt-PHB3.2
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	22.20	0.6599
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.005G078400 [exp]	30.59	0.6818
AT4G01310			Ribosomal L5P family protein (...		Potri.014G089100 [exp]	32.09	0.6858	RPL5.2
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Potri.009G039600 [exp]	35.49	0.6754	TIM10.1
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Potri.005G225100 [exp]	36.66	0.6437
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.010G066400 [exp]	38.72	0.7012	Pt-RPL23.6

Compare expression of checked genes

Potri.002G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.