Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67930 1065 / 0 Golgi transport complex protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203900 [exp] 1298 / 0 AT1G67930 1091 / 0.0 Golgi transport complex protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020754 [exp] 1038 / 0 AT1G67930 969 / 0.0 Golgi transport complex protein-related (.1) Lus10007330 [exp] 1036 / 0 AT1G67930 967 / 0.0 Golgi transport complex protein-related (.1) Lus10007329 [exp] 96 / 4e-22 AT1G67930 89 / 5e-36 Golgi transport complex protein-related (.1) Lus10020753 [exp] 0 / 1 AT1G67930 87 / 8e-20 Golgi transport complex protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF10392 [poplar] [flax] COG5 Golgi transport complex subunit 5
Representative CDS sequence Show only first row Show all	>Potri.002G058300.1 pacid=42779861 polypeptide=Potri.002G058300.1.p locus=Potri.002G058300 ID=Potri.002G058300.1.v4.1 annot-version=v4.1 ATGGCATCATCAGCAGCAACACTTCAAAGATCCCAACTCCCCTCCATAAACACCACCGCTTCTCCTTCACATTCTTCCTCTTCTTCCCCCCTTCATCGCC TCTCCACTTTCAAAACCCCTTCTTCGTCCTCTCCTCCTCCACCATTCTCAACCACCACAAACCCATCACCTTCCCCTTTAGACTCTCTCGCCAAAGACCC AATTCTCTCCCCATTCCTCTCCTCCTCCTTCTCATCCACTTCCTTCTCCTCCGCTGCCCTCTCCTCCGGTTCCCCTGCTTCCACTGCCGAACACCTCCAC CATGCCATTCGCCTCCTCGAATCCCAACTCCGTTCCGAAGTCCTTTCCCGCCATTCCCACCTCCTCCACCAACTCTCCTCCCTTAAAGACGCTGAACTCT CCCTCTCCACCCTCCGATCCGCTGTCTCCTCTCTCCAGTCCTCCGTCCGCCGCGTTCGATCCGAGCTTTCTGATCCCCATAATTCTATTCAGCCGAAAAC TATTCAGCTCTCGAACTTGCATCGAACCATCCAAGCGTTACAGCACACGACTCGGGCGCTGAGGTCGTCGAAAAAGCTTCGAGATTTAATATCTGCATCA GAATCAGAGCCTGAAAAATTGGATCTTGCCAAGGCGGCGCAATTGCATCGCGAGATCTTGACAATGTGTGATGAGTTTGATTTGAGAGAAATCGATGTGG TTGATGAAGAGCTCAGTTGGGTTAAAGAAACTGGGGAAAAACTGCGAAGCGAAGCAATGAAAGTATTAGAGAGAGGAATGGAAGGATTGAATCAGGCAGA AGTGGGAACTGGGTTGCAAGTTTTCTATAATTTAGGAGAGTTGAAGGTGACTGTGGAGCAATTGGTGAATAATTATAGGGGAATGGGAGTAAAGAGTGTG GGTTTGGCATTGGATATGAAGGCTATTTCTACGAGTGGTGGTGGTGGTTTTGGTCCAGGAGGGATAAGAGGGAGTGGGACTCCACACATTGGAGGAGGGG CGAAAGCAAGGGAGGGACTCTGGCAGAGAATGGGGAATTGTATGGATAGATTGCATTCTATTGTTGTCGCTATTTGGCATTTGCAGAGAGTGTTGTCCAA GAAGAGGGATCCATTTACCCATGTTTTGTTGCTTGATGAGGTTATTAAGGATGGTGATCCCATGCTAACAGACCGAGTTTGGGAGGCACTTGTGAAGGCT TTTGCAAGCCAAATGAAGTCTGCTTTCACTGCATCAAGTTTTGTTAAGGAGATATTTACCATGGGCTATCCTAAACTCCTCTCCTTGATAGAGAATCTAC TTGAAAGAATCTCACGTGATACAGATGTCAAAGGGGTTTTACCAGCTATAACTTTGGAAGGAAAGGAACAGATGGCTGCTGCCATTGAAATATTCCAGAC ATCTTTTCTGGCTCTGTGCTTAAGTCGCCTTTCAGATCTTGTGAACACTGTTTTCCCAGTTTCCAGCCGTGGAAGTGTTCCTTCCAAAGAACAAGTCTCA AGAATTCTCTCCCGTATCCAGGAAGAGGTTGAAGCAGTTCAATTGGATGGGCATTTGACTCTTCTTGTATTGCGTGAAATTGGCAAGGTTTTGCTCCTGC TTGCAGGACGAACTGAATACCAGATATCTGCTGGTCATGAGGCACGCCAAATTACAGGTCCTGCAACTGCCGCACAAGTCAAGAACTTTGCTTTGTGCCA GCATTTACAAGAAATCCATACGCGGATATCATCTATGATTGCTGGGATGCCCTTTCTTGCTGCGGATGTGTTGTCTCCTTCTCTGGGTGCAATATATGGG GTAGCTCGTGACTCAGTGACACCCTTGTTCAAAGCAATGATTGACTGTCTTGAGACATGCATCCTGCAAATTCACGATCACAACTTTGGTGCTCATGGTA TGGATGCTGCAATAGACAACAATGCTTCACCTTACATGGAGGATTTGCAGAAGTGCATTCTTCACTTTCGCACCGAGTTTTTGTCGAGGCTCTTGCCTTT AGCAAGGGCTACAATAGCAGGGACAGAAACTATATGCACCCAGCTTGTGAGAAGTATGGCATCACGGGTTTTGATATTCTTTATCAGACATGCATCTCTT GTACGACCCCTTTCAGAATCAGGGAAACTGAGGATGGCTAGAGACATGGCTGAGCTGGAGTTAACTGTAGGCCAGAGTTTGTTCCCAGTAGAACAACTTG GACCACCGTACCGGGCACTCCGAGCATTCCGGCCCCTTATTTTCCTGGAGACATCTCAGTTGGGAGGATCTCCTCTCCTTCAAGATCTGCCACCAAGTGT TGCACTTCACCACCTTTACACCCGAGGCCCTGATGAATTGGAGTCACCACTGCAAAGGAACAGGCTTACACCTCTGCAGTATTCATTGTGGCTGGATTCT CAAGGGGAGGATCAGATTTGGAAAGGTATCAAAGCAACTTTAGATGATTATGCCGCGAAGATTAGATCAAGAGGAGACAAGGAATTTAGCCCTGTATATC CTCTGATGCATCAATTAGGATCGTCTTTGACATAG
AA sequence Show only first row Show all	>Potri.002G058300.1 pacid=42779861 polypeptide=Potri.002G058300.1.p locus=Potri.002G058300 ID=Potri.002G058300.1.v4.1 annot-version=v4.1 MASSAATLQRSQLPSINTTASPSHSSSSSPLHRLSTFKTPSSSSPPPPFSTTTNPSPSPLDSLAKDPILSPFLSSSFSSTSFSSAALSSGSPASTAEHLH HAIRLLESQLRSEVLSRHSHLLHQLSSLKDAELSLSTLRSAVSSLQSSVRRVRSELSDPHNSIQPKTIQLSNLHRTIQALQHTTRALRSSKKLRDLISAS ESEPEKLDLAKAAQLHREILTMCDEFDLREIDVVDEELSWVKETGEKLRSEAMKVLERGMEGLNQAEVGTGLQVFYNLGELKVTVEQLVNNYRGMGVKSV GLALDMKAISTSGGGGFGPGGIRGSGTPHIGGGAKAREGLWQRMGNCMDRLHSIVVAIWHLQRVLSKKRDPFTHVLLLDEVIKDGDPMLTDRVWEALVKA FASQMKSAFTASSFVKEIFTMGYPKLLSLIENLLERISRDTDVKGVLPAITLEGKEQMAAAIEIFQTSFLALCLSRLSDLVNTVFPVSSRGSVPSKEQVS RILSRIQEEVEAVQLDGHLTLLVLREIGKVLLLLAGRTEYQISAGHEARQITGPATAAQVKNFALCQHLQEIHTRISSMIAGMPFLAADVLSPSLGAIYG VARDSVTPLFKAMIDCLETCILQIHDHNFGAHGMDAAIDNNASPYMEDLQKCILHFRTEFLSRLLPLARATIAGTETICTQLVRSMASRVLIFFIRHASL VRPLSESGKLRMARDMAELELTVGQSLFPVEQLGPPYRALRAFRPLIFLETSQLGGSPLLQDLPPSVALHHLYTRGPDELESPLQRNRLTPLQYSLWLDS QGEDQIWKGIKATLDDYAAKIRSRGDKEFSPVYPLMHQLGSSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	0	1
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.006G165300 [exp]	1.73	0.9137
AT5G64090			unknown protein		Potri.003G020500 [exp]	3.46	0.8805
AT5G18520			Lung seven transmembrane recep...		Potri.006G214900 [exp]	7.00	0.8308
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	10.00	0.8295
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	11.18	0.8769
AT5G60980			Nuclear transport factor 2 (NT...		Potri.015G058700 [exp]	11.74	0.8814
AT2G20760			Clathrin light chain protein (...		Potri.011G049500 [exp]	12.32	0.8734
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	17.02	0.8677	UBP20.1
AT1G60070			Adaptor protein complex AP-1, ...		Potri.006G092800 [exp]	19.74	0.8756
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	21.44	0.8011	Pt-RAN1.4

Compare expression of checked genes

Potri.002G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.