Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59090 330 / 9e-112 unknown protein AT4G21790 42 / 0.0004 ATTOM1, TOM1 tobamovirus multiplication 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203600 [exp] 493 / 3e-176 AT3G59090 362 / 2e-124 unknown protein Potri.010G097900 [exp] 48 / 4e-06 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004930 [exp] 214 / 2e-66 AT3G59090 237 / 6e-75 unknown protein Lus10040880 [exp] 154 / 2e-43 AT3G59090 180 / 3e-53 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [poplar] [flax] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Potri.002G058500.1 pacid=42777694 polypeptide=Potri.002G058500.1.p locus=Potri.002G058500 ID=Potri.002G058500.1.v4.1 annot-version=v4.1 ATGAATATAAAATCAAACTGCTCCCCGTTGGACCTGCTTATTGTTAATATAGCACTTGCTTGCATCGATGGTGCTCTTGCTTGTATTGCATTTTCTCAGT TTACAAGGATCCATCTGCGAAATCAACAAACTGGATGGACACGCCAGAAAGTACTCCATCTCATGGTTGCCTCTTGCAACTTGGGTTACTTCATCTACTT TATATCTACAGTTATTGCTACTTGTGATAGGTGGCCTTGCTGGTCTCATGCATGTGGTTTTGTCCTCATGGCATTTCCCAAAATTCTGTTCCTTGCAGCG TTTCTGCTTCTTCTATCTTTCTGGGTCGACCTTTGCCATCAGGCAAATGAAGAAGATGACGACGAAGAAGAACATAGCTCTCAACAGCCTTTGTTGGAAA GTTCAAAGAATAAACCTGGTTCAACGAACACAGATAATTTCTGGAGTTGCTGCTCATTCCGAGGCATTCATGTTGGTGGTCGTCAGAAATTTGTTATCAC AGTTGTCGTGTTGATCTTTTTCTTAATGCTGTCGTTTGCTGTGATAATCTGGATTGGAGTGGGAAAGAATCCAATTTGTTCTTCAGTAGCTGCCCGGGTC TATGTAGATTTTTTGGCCTCTGCAATCCTCATATTGGGAGGGGCTTTAGGCTGCTATGGTCTTCTCCTATTTCTTAAATTGAGGAATGTAAGGTCTGAGA CAGCTTCATCTGAGATGCGGAAGGTTGCTGGTCTGGCAGTTGTCTCTGTTGTATGTTTTACGTCAAGTGCTGCAGTGGCTCTTCTTACAGATGTACCTCT TCTATATGATTGGAGTATGGAGAATAAAAATGAAGCAAAAACACTAGTTCTTCTAGTTTTTTACTATTTTATAGGTTCGTCTGTGCCCTCAGCCTTTGTA TTATGGGCCATGAGAGAATTGCCAACCCCAGTTACAATTACACAAGCACAATCAAGAGCAGTAACTTTTTTTTGTTATGGGGCAGATGGAACACAAAATC CTCGGCACTGGGTTGCTGCTACAACTTCAAATAATCAGGTGTCAAAAGCAAGTCCAATATAA
AA sequence Show only first row Show all	>Potri.002G058500.1 pacid=42777694 polypeptide=Potri.002G058500.1.p locus=Potri.002G058500 ID=Potri.002G058500.1.v4.1 annot-version=v4.1 MNIKSNCSPLDLLIVNIALACIDGALACIAFSQFTRIHLRNQQTGWTRQKVLHLMVASCNLGYFIYFISTVIATCDRWPCWSHACGFVLMAFPKILFLAA FLLLLSFWVDLCHQANEEDDDEEEHSSQQPLLESSKNKPGSTNTDNFWSCCSFRGIHVGGRQKFVITVVVLIFFLMLSFAVIIWIGVGKNPICSSVAARV YVDFLASAILILGGALGCYGLLLFLKLRNVRSETASSEMRKVAGLAVVSVVCFTSSAAVALLTDVPLLYDWSMENKNEAKTLVLLVFYYFIGSSVPSAFV LWAMRELPTPVTITQAQSRAVTFFCYGADGTQNPRHWVAATTSNNQVSKASPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59090			unknown protein		Potri.002G058500 [exp]	0	1
AT3G07530			unknown protein		Potri.004G236000 [exp]	2.44	0.7297
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014348 [exp]	5.29	0.6994
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.012G094600 [exp]	6.92	0.6798
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.010G234400 [exp]	11.22	0.6385
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.004G086900 [exp]	12.00	0.6630
AT5G36930			Disease resistance protein (TI...		Potri.007G099700 [exp]	13.30	0.6803
AT3G24530			AAA-type ATPase family protein...		Potri.006G158600 [exp]	14.49	0.6496
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	15.58	0.6526
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	17.32	0.6404
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	20.39	0.6402

Compare expression of checked genes

Potri.002G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.