Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06500 95 / 4e-24 unknown protein AT4G38340 56 / 8e-09 NLP3 Plant regulator RWP-RK family protein (.1) AT1G20640 56 / 2e-08 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 54 / 7e-08 NLP5 Plant regulator RWP-RK family protein (.1) AT3G59580 53 / 9e-08 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G35270 53 / 1e-07 NLP2 Plant regulator RWP-RK family protein (.1) AT1G64530 53 / 1e-07 NLP6 Plant regulator RWP-RK family protein (.1) AT4G35590 53 / 1e-07 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT1G18790 52 / 2e-07 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT4G24020 52 / 2e-07 NLP7 NIN like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205500 [exp] 56 / 1e-08 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 54 / 6e-08 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 54 / 7e-08 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G293300 [exp] 53 / 7e-08 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 53 / 9e-08 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 53 / 1e-07 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.007G133400 [exp] 53 / 1e-07 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.006G223100 [exp] 52 / 1e-07 AT5G16100 72 / 7e-14 unknown protein Potri.016G042900 [exp] 52 / 2e-07 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030744 [exp] 56 / 2e-08 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 56 / 2e-08 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10013224 [exp] 55 / 2e-08 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 55 / 3e-08 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 55 / 4e-08 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10012257 [exp] 55 / 4e-08 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10022621 [exp] 53 / 1e-07 AT2G17150 212 / 3e-60 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 53 / 1e-07 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 53 / 2e-07 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 52 / 2e-07 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.002G058800.1 pacid=42777257 polypeptide=Potri.002G058800.1.p locus=Potri.002G058800 ID=Potri.002G058800.1.v4.1 annot-version=v4.1 ATGAATATCCAGCAGCAGCAGCAACCGAATCAATCAAAACCGCCCTCCTGGGAAGCCATCTCCAAGCACTTCTCTCTTCCTCTCTCCGATGCCGCTAACA ATCTCGGCGTCTGTGTCAGTGTGCTTAAGAAAATCTGCCGTGACAATGGTCTTGATAGGTGGCCATATCGCAAGTACTTAGCTGGAAAGAGTATAGAGGA CATTAGAAGGTATGCTGCTAGAGAAAAAATCAAAGCCATTGCCGACCTCGCCAAGGCTGCTAACAAAAGTGGTATCCAGCAGCAAAACAATGAGAATTCC AAACCTCACAAATTGCAGCAACAAGGAACTAAGGATGTTCTAGTTGGGCGGCAACATATCACGCTCACTCCAGGGTTGGCAAAAGGATTGATGGGTTTGG ATGAGTTTAAATATGGATTTCCATCAGATGGTTTATCAACAGCTACGAATAAATGGTGGGGTAGCAGCCTGTCTGATACTCAAAGGGCCACTGATAGAGC TGGAATTGAGACTGATGAAGATGACGGCCGTCAATCTGAAGAAAAGGTAGATGCTGGTACCAGTGTGGTGATTGTAGACGAAGAGAAAGGTGAGAATGGA AAGGTGGAGAGTAATGAAATTGATCCACAAGGGACTGGTTTATTAACGTCTGTTAGGAAAAGAGCTGCTGAAGAAGGGCGAGAAGCACTTAAACTTGGTG TCTACCGCACTTATGGTGTAAACAAGTTAGGCAGGAAACAAAGAGCTTTGCTTCTTCGAATATTTGGATCTTCATTGCCAAAACAATGGATTCAGGACTT CAGTTCAAATAGAGGTGGATTGTAG
AA sequence Show only first row Show all	>Potri.002G058800.1 pacid=42777257 polypeptide=Potri.002G058800.1.p locus=Potri.002G058800 ID=Potri.002G058800.1.v4.1 annot-version=v4.1 MNIQQQQQPNQSKPPSWEAISKHFSLPLSDAANNLGVCVSVLKKICRDNGLDRWPYRKYLAGKSIEDIRRYAAREKIKAIADLAKAANKSGIQQQNNENS KPHKLQQQGTKDVLVGRQHITLTPGLAKGLMGLDEFKYGFPSDGLSTATNKWWGSSLSDTQRATDRAGIETDEDDGRQSEEKVDAGTSVVIVDEEKGENG KVESNEIDPQGTGLLTSVRKRAAEEGREALKLGVYRTYGVNKLGRKQRALLLRIFGSSLPKQWIQDFSSNRGGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06500			unknown protein		Potri.002G058800 [exp]	0	1
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.013G059300 [exp]	1.41	0.8023	GTF901,Pt-TBP1.3
AT1G07400			HSP20-like chaperones superfam...		Potri.006G073500 [exp]	7.61	0.7593
AT2G35320		ATEYA	EYES ABSENT homolog (.1)		Potri.001G144000 [exp]	21.63	0.7161
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	23.57	0.7414
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.002G117200 [exp]	24.28	0.7391
AT1G51200			A20/AN1-like zinc finger famil...		Potri.001G018600 [exp]	25.69	0.6811
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.012G104700 [exp]	25.78	0.7144
AT2G24030			zinc ion binding;nucleic acid ...		Potri.006G182601 [exp]	26.32	0.7111
AT1G48200			unknown protein		Potri.002G084400 [exp]	27.96	0.6719
AT1G31240			Bromodomain transcription fact...		Potri.015G118200 [exp]	32.49	0.6922

Compare expression of checked genes

Potri.002G058800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.