Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59110 704 / 0 Protein kinase superfamily protein (.1) AT2G42960 683 / 0 Protein kinase superfamily protein (.1) AT1G56720 582 / 0 Protein kinase superfamily protein (.1.2.3) AT5G18500 550 / 0 Protein kinase superfamily protein (.1.2) AT1G09440 545 / 0 Protein kinase superfamily protein (.1) AT3G17420 503 / 5e-176 GPK1 glyoxysomal protein kinase 1 (.1) AT4G01330 469 / 2e-162 Protein kinase superfamily protein (.1.2) AT1G01540 466 / 2e-161 Protein kinase superfamily protein (.1.2) AT4G02630 459 / 4e-158 Protein kinase superfamily protein (.1) AT4G34500 417 / 1e-142 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203300 [exp] 853 / 0 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 659 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 633 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 574 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G001600 [exp] 561 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 476 / 8e-165 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 451 / 3e-155 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G115600 [exp] 429 / 2e-146 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 426 / 1e-145 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001055 [exp] 766 / 0 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 760 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 696 / 0 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 696 / 0 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 563 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036863 [exp] 498 / 7e-174 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10041593 [exp] 458 / 1e-157 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 455 / 5e-157 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 456 / 1e-156 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 450 / 2e-154 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G059000.1 pacid=42776841 polypeptide=Potri.002G059000.1.p locus=Potri.002G059000 ID=Potri.002G059000.1.v4.1 annot-version=v4.1 ATGTCATCTGAGAGTTTGAATGCAGAACTATCAAAGAAGACATCGGTTTTTGGTCTGAAACTATGGGTTTTAATAGGAGTATCTGTAGGAGTGTTTATAA TTTCTATTCTCTGTGCCTTATCTGCATGGGTTACATTTCGGAGGAAATCTAGGAGATCAGTGGACAAGTACTCGCATTCCAAAATACCAAACACATCAAA AGATATTAAGGTTGATAGGGTTGGGGTTCAAAATTTCAACGATCACCCTGAAAGTTTATTCCTCACAGTCAATGATAAATTGAGTGACAAGAATTCAGAG AAAATGCAGGTTCATTTGGGAATGAGCAAATCTAGTGATCCTGACAATGCCAGTCAATGCAGCTCGATTTATCACCATGAGAGGGCATGCAGTTCCCATT CAGGGGAAGAAGGAAGCTCTGGGACTTTTCGGAAGCAATCTTCATTATCACACGCTGGACTTGTTACAGCCTCTCCCTTAATCGGCTTGCCAGAATTTTC ACACCTTGGATGGGGCCACTGGTTTACACTTAGGGATCTTGAGTTTGCTACAAATAGTTTTGCAGTAGAGAATGTGCTTGGCGAGGGTGGATATGGAGTT GTATACAAGGGTACACTAATAAATGGAACCGAGGTAGCAGTGAAGAAGCTTCTTAACAATCTGGGACAGGCAGAGAAGGAATTTAGGGTCGAAGTGGAGG CTATAGGTCATGTTCGACACAAGAATCTTGTGCGGCTTCTTGGCTACTGTATCGAAGGGGTTCACAGGATGCTGGTGTATGAATATGTGAATAATGGGAA CTTAGAACAATGGCTGCATGGGGCAATGCATCATCATGGTATCCTTACTTGGGAGGCCCGCATGAAGGTTCTTCTGGGTACTGCTAAGGCGCTTGCTTAT TTGCATGAAGCAATAGAACCAAAGGTTGTTCATCGAGACATAAAATCCAGCAATATTTTGATTGATGACGAGTTTAACGCCAAGGTTTCTGATTTTGGAT TGGCCAAGCTCCTTGGTTCTGGAGAGAGTCATATCACAACAAGAGTTATGGGTACATTTGGTTACGTTGCACCAGAGTATGCAAACACAGGCTTACTAAA TGAGAAGAGTGACATTTATAGCTTTGGAGTCCTGCTGCTAGAAGCAGTGACTGGAAGGGACCCTGTGGACTATGGCCGGCCAGCTAACGAGGTTAATCTT CTTGAGTGGCTTAAAATGATGGTTGGGACAAGAAGAGCTGAGGAAGTTGTGGACCCAAATCTTGAAGTTAAACCAACAACACGTGCTTTAAAACGTGCTC TTTTGGTTGCACTAAGGTGTGTTGATCCTGATGCAGAAAGGAGACCTAAAATGACCCAAGTTGTAAGGATGCTTGAAGCTGATGAGTACCCGCTTCGTGA GGATCGGAGGAACAGAAAGACTCGTACTACTAGCATGGAAATTGAATCCATGAGAGAGGAATCAACAGAAAGTGAAAACAAGGGAGTGGATTCAGAAAGC CGTTTAGCTGAGACAACTCATGGATAG
AA sequence Show only first row Show all	>Potri.002G059000.1 pacid=42776841 polypeptide=Potri.002G059000.1.p locus=Potri.002G059000 ID=Potri.002G059000.1.v4.1 annot-version=v4.1 MSSESLNAELSKKTSVFGLKLWVLIGVSVGVFIISILCALSAWVTFRRKSRRSVDKYSHSKIPNTSKDIKVDRVGVQNFNDHPESLFLTVNDKLSDKNSE KMQVHLGMSKSSDPDNASQCSSIYHHERACSSHSGEEGSSGTFRKQSSLSHAGLVTASPLIGLPEFSHLGWGHWFTLRDLEFATNSFAVENVLGEGGYGV VYKGTLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMHHHGILTWEARMKVLLGTAKALAY LHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYGRPANEVNL LEWLKMMVGTRRAEEVVDPNLEVKPTTRALKRALLVALRCVDPDAERRPKMTQVVRMLEADEYPLREDRRNRKTRTTSMEIESMREESTESENKGVDSES RLAETTHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59110			Protein kinase superfamily pro...		Potri.002G059000 [exp]	0	1
AT1G63300			Myosin heavy chain-related pro...		Potri.003G124600 [exp]	1.41	0.9463
AT5G55970			RING/U-box superfamily protein...		Potri.001G371200 [exp]	2.00	0.9516
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	2.82	0.9426
AT3G51730			saposin B domain-containing pr...		Potri.006G107300 [exp]	3.46	0.9281
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	3.60	0.9274
AT5G43190			Galactose oxidase/kelch repeat...		Potri.002G118700 [exp]	3.74	0.9397
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.006G092600 [exp]	5.00	0.9128
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	5.19	0.9450
AT2G41610			unknown protein		Potri.014G108300 [exp]	6.70	0.9408
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	6.92	0.9407	OMT1.1

Compare expression of checked genes

Potri.002G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.