Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18170 176 / 7e-53 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G29860 169 / 2e-50 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G46350 154 / 2e-44 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT2G47260 146 / 3e-41 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT5G49520 144 / 1e-39 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G69310 140 / 2e-39 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT3G62340 123 / 4e-33 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT2G44745 117 / 3e-31 WRKY WRKY12 WRKY family transcription factor (.1) AT4G39410 118 / 8e-31 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G46130 110 / 4e-30 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203200 [exp] 484 / 2e-173 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.001G352400 [exp] 247 / 2e-80 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.011G079300 [exp] 243 / 8e-79 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.014G118200 [exp] 153 / 7e-44 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 154 / 1e-43 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G193000 [exp] 150 / 5e-43 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.010G147700 [exp] 148 / 1e-41 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.008G094000 [exp] 144 / 9e-41 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.010G160100 [exp] 143 / 2e-40 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004612 [exp] 191 / 8e-59 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10004537 [exp] 181 / 7e-55 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 145 / 1e-40 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036891 [exp] 143 / 6e-40 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10017067 [exp] 144 / 8e-40 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037094 [exp] 140 / 2e-38 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10036401 [exp] 119 / 5e-32 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10007906 [exp] 117 / 2e-31 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10000173 [exp] 118 / 9e-31 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 120 / 2e-30 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G059100.1 pacid=42776751 polypeptide=Potri.002G059100.1.p locus=Potri.002G059100 ID=Potri.002G059100.1.v4.1 annot-version=v4.1 ATGTCAAATGAAAAGGAGGATCCATACAATTACGATCCCTTTTACTACAATATTCAGCACCGAACCAACCGGCCGGTGTCGGTGTTTCCATTCTTCAATG ACAACAATCTCTCCGTGTACAATCAACAATCACCCACACAAAGCTTACAAGGGTTTAACGATCCCCCGTATATGAGCTTCACTGACTGTTTACATGGCTC CGTGGATCACTATAACACCTTATCAAGAGCCCTCAACGTGTCTTGCTCGTCATCTGAGGTAATTAGTCCCATTGAAGACGGTTCAAAGAAAACTGGTGCT GGAGAATTATCAGCAGCTACTAATGAAAACCTACCATCCACGCCGAATTCCTCCATATCTAATTCTTCTTCTAATGATGGAGCAACCGAAGAAGACTCTG GGAAGATCAAGAAAGATAAGCAGCCAAAAGAGAGTGAAGATGGGGATGGAGATGCTAAGAAAGTGAGCAAGACAAAAAAGAAGGAGAAACGGCAAAAGGA GCCACGGTTTGCCTTCTTGACAAAGAGTGAAATTGATAATCTTGAAGATGGATATAGATGGAGAAAGTATGGTCAGAAGGCCGTGAAGAATAGCCCTTAT CCAAGAAGTTATTACAGATGCACCAGTCAAAAATGCACGGTTAAGAAACGTGTGGAAAGATCATTCCAAGACCCATCACTCGTCATCACCACGTATGAAG GGCAGCATAACCATCACTGTCCAGCAACTCTTCGAGGTAATGCTACTGGAATGCTACCACCTTCCCTTCTGGCATCGACATCAATAGGGCAGAGCTTTCC TCAGGATCTCCTGACTCGCTTACTACCAGCGAGTAACCAACAAGGCGACCAAACTTCGATGTTCTATCACAGCCTTGCTCCACAGAATCAGCAGCTGCAG CAGCACCAGCTCTATTCTCCTGATTATGGCCTTTTGCAAGATTTAGTGCCCTCCTTCATCCACAAGCAACAGCCATGA
AA sequence Show only first row Show all	>Potri.002G059100.1 pacid=42776751 polypeptide=Potri.002G059100.1.p locus=Potri.002G059100 ID=Potri.002G059100.1.v4.1 annot-version=v4.1 MSNEKEDPYNYDPFYYNIQHRTNRPVSVFPFFNDNNLSVYNQQSPTQSLQGFNDPPYMSFTDCLHGSVDHYNTLSRALNVSCSSSEVISPIEDGSKKTGA GELSAATNENLPSTPNSSISNSSSNDGATEEDSGKIKKDKQPKESEDGDGDAKKVSKTKKKEKRQKEPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPY PRSYYRCTSQKCTVKKRVERSFQDPSLVITTYEGQHNHHCPATLRGNATGMLPPSLLASTSIGQSFPQDLLTRLLPASNQQGDQTSMFYHSLAPQNQQLQ QHQLYSPDYGLLQDLVPSFIHKQQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.002G059100 [exp]	0	1
AT5G57940		ATCNGC5	cyclic nucleotide gated channe...		Potri.018G106100 [exp]	5.19	0.7474	CNGC5.1
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018600 [exp]	6.32	0.7333
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G044900 [exp]	9.32	0.7268
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197500 [exp]	10.39	0.7126
AT3G22550			Protein of unknown function (D...		Potri.005G211500 [exp]	10.48	0.7058
AT2G23770			protein kinase family protein ...		Potri.008G160501 [exp]	13.74	0.7174
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	17.14	0.7204
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.007G067600 [exp]	17.14	0.6982
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Potri.001G219900 [exp]	19.79	0.6527
AT2G46550			unknown protein		Potri.002G173200 [exp]	29.83	0.7104

Compare expression of checked genes

Potri.002G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.