Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42910 575 / 0 Phosphoribosyltransferase family protein (.1) AT1G10700 487 / 2e-173 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G35390 76 / 3e-15 Phosphoribosyltransferase family protein (.1.2.3) AT2G44530 73 / 3e-14 Phosphoribosyltransferase family protein (.1.2) AT1G32380 71 / 2e-13 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202100 [exp] 616 / 0 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.010G045000 [exp] 504 / 3e-180 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.001G145700 [exp] 82 / 3e-17 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.003G088400 [exp] 78 / 6e-16 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 77 / 1e-15 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020768 [exp] 572 / 0 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 572 / 0 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 569 / 0 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10010935 [exp] 566 / 0 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10006202 [exp] 479 / 4e-170 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 478 / 9e-170 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10012074 [exp] 77 / 2e-15 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 74 / 4e-14 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 62 / 2e-10 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 59 / 2e-09 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain CL0533 [poplar] [flax] PRTase-like PF13793 [poplar] [flax] Pribosyltran_N N-terminal domain of ribose phosphate pyrophosphokinase
Representative CDS sequence Show only first row Show all	>Potri.002G059700.2 pacid=42779819 polypeptide=Potri.002G059700.2.p locus=Potri.002G059700 ID=Potri.002G059700.2.v4.1 annot-version=v4.1 ATGGAGGTGGACAAAGTAGAGACACAACAACAACAACAGAAACAGAAGCAAGTGCATCTGTTTTACTGCGTGGAATCCGAAGAGCTTGCCCGTAATGTTG CCGCTCACTCTGAACTCATCACACTCCAATCCATCAACTGGAGGAATTTCGATGATGGATTTCCTAATCTTTTTATAAACAATGCTGAAAATTTGCGAGG TCAACATGTCGCCTTCCTTGCATCTTTTAGTTCTCCAGGAGTTATCTTCGAACAGCTTTCCGTCATTTATGCACTGCCGCGTCTGTTTGTTGCCTCCTTC TCGTTGGTGTTGCCTTTCTTTCCAACTGGCTCCTTTGAACGAATGGAAGAAGAAGGGGATGTTGCAACTGCATTTACCATGGCTAGGATATTATCGAATA TTCCCATTTCAAGAGGTGGCCCCACTAGTTTAGTCATCTATGACATACACGCACTGCAGGAAAGATTCTATTTTGGGGACCATGTTTTGCCTTTATTTGT TACTGGGATTCCTCTGTTAAAGCAACGTCTTCACCAACTTCCTGAATCTGATAAGATTGTTGTTGCTTTTCCGGATGATGGAGCCTGGAAGCGGTTCCAC AAGCTGTTGGATCATTTTCCTATGGTGGTATGTGCGAAGGTTCGTGAAGGTGATAAGAGGATAGTTAGAATAAAGGAGGGAAATCCTGCCGGCTGCCATG TGGTTATTGTTGATGATTTGGTACAATCTGGAGGCACCCTTATTGAGTGCCAGAAAGTATTGGCAGCTCATGGGGCAGCAAAAGTCAGTGCATATGTCAC CCACGGGGTGTTTCCTAAGCGTTCCTGGGAGCGATTTACTCACAAAGATAATGGCATGGAGAATGCATTTGCTTATTTTTGGATAACAGATTCCTGCCCT CACACTGTGAAAGCCATCACAAATAAGCCTCCATTTGAAGTTTTGAGCCTTGCTGGATCCATTGCTGATGCTTTACAAATATGA
AA sequence Show only first row Show all	>Potri.002G059700.2 pacid=42779819 polypeptide=Potri.002G059700.2.p locus=Potri.002G059700 ID=Potri.002G059700.2.v4.1 annot-version=v4.1 MEVDKVETQQQQQKQKQVHLFYCVESEELARNVAAHSELITLQSINWRNFDDGFPNLFINNAENLRGQHVAFLASFSSPGVIFEQLSVIYALPRLFVASF SLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRGGPTSLVIYDIHALQERFYFGDHVLPLFVTGIPLLKQRLHQLPESDKIVVAFPDDGAWKRFH KLLDHFPMVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKRSWERFTHKDNGMENAFAYFWITDSCP HTVKAITNKPPFEVLSLAGSIADALQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42910			Phosphoribosyltransferase fami...		Potri.002G059700 [exp]	0	1
AT3G28200			Peroxidase superfamily protein...		Potri.001G351000 [exp]	9.94	0.8502
					Potri.004G101600 [exp]	14.31	0.8259
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.015G131100 [exp]	18.38	0.7958
					Potri.006G056000 [exp]	22.97	0.8317
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Potri.005G144900 [exp]	23.15	0.8212
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G162400 [exp]	26.75	0.8286	CHI.2
AT3G19940			Major facilitator superfamily ...		Potri.005G090700 [exp]	27.87	0.7873
AT2G18910			hydroxyproline-rich glycoprote...		Potri.006G166400 [exp]	28.00	0.7952
AT5G08690			ATP synthase alpha/beta family...		Potri.008G126600 [exp]	32.68	0.8128	ATP.2
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	33.98	0.7899	ACCC.1

Compare expression of checked genes

Potri.002G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.