Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29400 780 / 0 AML5 MEI2-like protein 5 (.1.2) AT2G42890 691 / 0 AML2, MEI2 MEI2-like 2 (.1.2.3) AT4G18120 634 / 0 AML3 MEI2-like 3 (.1.2) AT5G07290 446 / 2e-143 AML4 MEI2-like 4 (.1) AT5G61960 443 / 3e-142 AML1 MEI2-like protein 1 (.1.2) AT3G26120 131 / 1e-31 TEL1 terminal EAR1-like 1 (.1) AT1G67770 117 / 2e-27 TEL2 terminal EAR1-like 2 (.1) AT5G07930 86 / 4e-18 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT1G37140 73 / 4e-14 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G54900 71 / 1e-12 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202000 [exp] 1440 / 0 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.001G067300 [exp] 599 / 0 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.015G106000 [exp] 568 / 0 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 377 / 1e-116 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.012G107900 [exp] 300 / 2e-92 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2) Potri.012G107100 [exp] 305 / 6e-90 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.008G183000 [exp] 135 / 9e-33 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.010G051100 [exp] 135 / 1e-32 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 96 / 5e-21 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007346 [exp] 1077 / 0 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10020769 [exp] 1075 / 0 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 1001 / 0 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 987 / 0 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10032537 [exp] 305 / 8e-90 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10043204 [exp] 303 / 5e-89 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10036953 [exp] 127 / 4e-30 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 126 / 5e-30 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 96 / 6e-22 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10002046 [exp] 99 / 3e-21 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G059800.2 pacid=42779609 polypeptide=Potri.002G059800.2.p locus=Potri.002G059800 ID=Potri.002G059800.2.v4.1 annot-version=v4.1 ATGGAGCAAGATTTGAAGGGCACAATGTCTGGTCCATCAAAAATTCCAGTTGTTAATAGTAGTAAGAAAGTGGGCACTGGAGCATGGGGGATCCCACTTA GAACTGATGCAAGATTGTTTTCTAGCTCATTGCCTGTCCTTCCACATGAAAAGCTGAACTTTCATGAATCAGAGAATTGTGGTCGATCTATTGATGATAG CTCACCTAACTTGAATAAACTCGACCTTGAAACTGAGGTCACAGATCTATTTGAAGACATTGAACCAAGTGCAATTGGAAATTTGCTTCCTGATGACGAC GAACTTCTTTCTGGCATAATGGATGATTTTGATCTTAGTGGGTTGCCTAGTCAAGTGGAGGATTTGGAAGAATGTGATTTCTTTGGTCCTGGAGGGGGGA TGGAGTTGGATTTTGAATCCCAAGAAAGCCTTCGTATTGGTATGTCCAAGCTAAACATGTCTGATGGGATTCCTGCAAATGGGGTTGGTCATTATCCTCT TCCAAATGGTGTGGGAACAGTTGCTGGGGAACATCCATATGGGGAGCATCCTTCAAGAACATTATTTGTTCGGAATATCAATAGTAATGTGGAGGACTCT GAATTGAGATCTCTCTTCGAGCAATTTGGGGATATCAGAACATTATACACTGCATGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGATATTCGAG ATGCTCGGACTGCAATGCGTGCGCTACAAAATAAGCCCTTAAGGCGGAGAAAACTGGACATTCATTTTTCAATTCCCAAGGATAACCCGTCTGAAAAGGA TATAAATCAAGGGACTCTTGTAGTCTTCAATTTGGATGCATCTGTATCAAATGATGATCTTCGCCTAATATTTGGGGCTTATGGTGAGGTCAAAGAGATA AGAGAAACACCACACAAGCGGCACCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAGGCAGCTCTGAGAGCATTAAATAAGAGTGACATTGCTG GAAAGCGCATTAAGCTTGAACCTAGCCGCCCCGGTGGAGCCCGTAGAAACATGATGCAGCAAATAAGTCAAGAGCTGGAACAAGATGAAGTTCGAAGTTT TCGACATCAAGTAGGCTCACCAGTGGGGAACTCTCCTCCAGGTGCCTGGCTTGGCAGCCCAGTTGAACACAATCCATTGCATGGTTTTAGCAAGTCCCCA GGTCTTGGAACTTTAAGTCCTGTAAATGGAAATAATTTGCCTGGCTTGGCTTCAATTCTCCCCCCTCATGTCTCTAACCCTGCAAAGATTGCCCCAATTG GCAAGGACCATGGAAGGGCTAACCATGCAAACCAGATGGTTACCAACTCTGGATCAATGCAAGGAGCACCCTATCAACATTCTTGTTCATTCACCGACCA GAAATTGAGCACCAGTCCTGTTCCAACGTCAAATTCATCTGGTATAGGCACATTGACTGGTCCTCAGTTTCTCTGGGGAAGTTCTGCTGCATGGCCGACA TCATCTGTTGGAAATGCATTTCCATCACGTGGGCAAGGACAGGGTTTTCCATACACCAGTAGGCATGGATCTCTTCTTGGTTCACATCACCATCACGTTG GATCTGCTCCATCCGGTCTTCCTCTTGATAGGCATTTTGGCTTCTTCCCGGAATCACCAGAAACATCTTTCATGAACCAAGTTGCACTGGGGGGCATGGG TTTAAATCGCAACACTGGAAATTATATGATGAACATGGGTGGCCGTGCAGCTGTGGGTGCTGGCATCGGACTTCCAGGTCCCCTGACTGAAAATGGTTCA CCTAGTTACCGGGTGATGTCATTGCCTAGGCACAATCCTATGTTTATGGGGGCTGGTTCTTATTCAGGACCAGTGACAATCGGCAATGAGGGATTTGTTG AACGTGTTCGAAGTCGGCGGGTAGAGAATAATGGGAGCCAGATAGATTGCAAGAAGCAGTATCAGCTTGATTTGGAAAAAATCATTAGCGGGGAAGATAC TAGGACAACTTTAATGATTAAAAACATCCCTAACAAGTACACTTCAAAGATGCTGCTGGCTGCTATTGATGAGATTCACCGCGGTACTTATGACTTTCTC TATCTTCCCATTGATTTTAAGAATAAATGCAATGTGGGTTATGCCTTCATCAATATGGTGTCTCCCTCACACATCATTTCCTTCTATGAGGCATTTAATG GGAAGAGGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCACTGGCATATGCTCGAATTCAGGGCAAGGGTGCCCTCGTGACACACTTTCAGAATTCAAG CTTAATGAATGAAGATAAGCGATGCCGCCCAATTCTCTTCCACTCCGAGGGCCAAGAGGCTGCTGATCAGGAACCTTTCCTATCTGGTAATTTAAACATT TGTATCCGTCAGCCTGATGGATCTTATTTCGGGGATTCGTTCGACAGCCCAGAGGACAGTCTGGATGAGAAAGCGGAGAAGAATTAA
AA sequence Show only first row Show all	>Potri.002G059800.2 pacid=42779609 polypeptide=Potri.002G059800.2.p locus=Potri.002G059800 ID=Potri.002G059800.2.v4.1 annot-version=v4.1 MEQDLKGTMSGPSKIPVVNSSKKVGTGAWGIPLRTDARLFSSSLPVLPHEKLNFHESENCGRSIDDSSPNLNKLDLETEVTDLFEDIEPSAIGNLLPDDD ELLSGIMDDFDLSGLPSQVEDLEECDFFGPGGGMELDFESQESLRIGMSKLNMSDGIPANGVGHYPLPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDS ELRSLFEQFGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDASVSNDDLRLIFGAYGEVKEI RETPHKRHHKFIEFYDVRAAEAALRALNKSDIAGKRIKLEPSRPGGARRNMMQQISQELEQDEVRSFRHQVGSPVGNSPPGAWLGSPVEHNPLHGFSKSP GLGTLSPVNGNNLPGLASILPPHVSNPAKIAPIGKDHGRANHANQMVTNSGSMQGAPYQHSCSFTDQKLSTSPVPTSNSSGIGTLTGPQFLWGSSAAWPT SSVGNAFPSRGQGQGFPYTSRHGSLLGSHHHHVGSAPSGLPLDRHFGFFPESPETSFMNQVALGGMGLNRNTGNYMMNMGGRAAVGAGIGLPGPLTENGS PSYRVMSLPRHNPMFMGAGSYSGPVTIGNEGFVERVRSRRVENNGSQIDCKKQYQLDLEKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDEIHRGTYDFL YLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKRWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEAADQEPFLSGNLNI CIRQPDGSYFGDSFDSPEDSLDEKAEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.002G059800 [exp]	0	1
AT1G11950			Transcription factor jumonji (...		Potri.011G009700 [exp]	2.44	0.8867
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	2.44	0.8768
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	6.92	0.8723
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	7.34	0.8860
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	7.74	0.8479
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	8.83	0.8626
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	9.53	0.8766
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G061400 [exp]	10.00	0.8680
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	10.24	0.8448
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	10.39	0.8643

Compare expression of checked genes

Potri.002G059800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.