Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATMPK20.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42880 897 / 0 ATMPK20 MAP kinase 20 (.1) AT3G14720 767 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 760 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT5G19010 715 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT3G18040 667 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G73670 657 / 0 ATMPK15 MAP kinase 15 (.1) AT1G18150 648 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G01450 591 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 330 / 6e-108 ATMPK4 MAP kinase 4 (.1) AT4G11330 314 / 6e-102 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201800 [exp] 1118 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.011G102500 [exp] 859 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.001G381300 [exp] 848 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.010G029700 [exp] 721 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 721 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.012G048600 [exp] 684 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 677 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G112200 [exp] 630 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 625 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005568 [exp] 800 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10013702 [exp] 798 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10041234 [exp] 695 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 678 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 671 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10027248 [exp] 625 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10021784 [exp] 612 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10034601 [exp] 511 / 2e-177 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10008339 [exp] 330 / 3e-107 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 329 / 4e-107 AT2G43790 692 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.002G059900.1 pacid=42778640 polypeptide=Potri.002G059900.1.p locus=Potri.002G059900 ID=Potri.002G059900.1.v4.1 annot-version=v4.1 ATGCAGCAAGATCAGAGAAAAAAGAATTCAACAGAGATGGACTTTTTCTCTGAATATGGTGATGCCAATAGGTACAAAATTCAGGAAGTTATTGGGAAAG GCAGTTATGGTGTTGTTTGCTCTGCAATTGACACTCACACCGGTGAGAAAGTGGCAATAAAGAAGATTCATGATATTTTCGAACACATTTCTGATGCTGC TCGTATATTGCGTGAGATAAAGCTGCTCAGGCTCCTAAGACATCCTGATATTGTGGAAATTAAACACATTATGCTACCACCTTCAAGAAGGGATTTTAAA GATATCTATGTTGTTTTTGAGCTCATGGAGTCGGATCTTCATCAAGTCATCAAAGCCAATGATGACTTGACACGAGAGCACTATCAATTTTTTCTTTACC AGCTACTTCGTGCATTAAAATATATCCACACAGCAAATGTTTATCATCGAGATTTAAAGCCAAAAAATATATTGGCAAATGCAAACTGTAAGCTTAAAAT CTGTGATTTTGGGTTAGCAAGAGTTGCTTTCAATGACACGCCCTCGACAATATTCTGGACGGATTATGTTGCTACAAGATGGTATAGAGCTCCTGAACTC TGTGGGTCCTTTTTCTCCAAGTATACACCAGCAATTGATATATGGAGTATAGGCTGCATTTTTGCTGAAGTACTAACAGGGAAACCACTTTTCCCTGGCA AAAATGTAGTTCACCAGTTGGACTTGATGACTGATCTACTTGGCACACCATCATTGGATACAATCTCTCTGGTTCGAAATGATAAGGCAAGGAGATATTT AACCAGCATGAGGAAAAAGCAGCCTGTTCCACTCGCACAGAAATTTCCCAATGCTGATCCTTTGGCACTACGATTGTTGGAAAGGCTACTTGCTTTTGAC CCCAAAGATCGTCCAACCGCTGAAGAGGCACTGGCAGATCCTTACTTCAAGGGATTGGCAAGAGTAGAGAGGGAGCCTTCCTGCCAGCCAATAACAAAGA TGGAGTTTGAGTTTGAGAGGCGAAGAGTTACAAAGGAGGATGTACGAGAGCTAATTTTTCGGGAGATACTGGAATACCATCCTCAACTGCTCAAGGACTA TTTAAATGGAACTGAGAGGACTAACTTTCTTTATCCAAGTGCCGTTGATCAATTCAGAAAGCAGTTTGCACATCTTGAGGAAAATGGTGGTAAAAGTGGA CCAGTAATTCCTCTTGAAAGAAAGCATGCATCTCTTCCTAGGTCTACAATTGTGCATTCAAGCTCAATCCCTACCAAAGAACAACAGAATCTTGCTTCCT TCAAGGACCGGCACACTGCAGAGGAAGCATACAACAAAAATCCCAGAGACACTGAAGGAATTCCCGTAAATATATCAAGGACCTTGCAGGCACAGCAGAG AGTTCCACTGGCTAAACCTGGAAAGGTTGTAGGGCAAGTTGTATCATACGAGAATGGGAGCATCGTGAAAGATGCCCGTGACCCGAGAACATACATCAGA AGTGCAGTCCTTCCTCCACACGCCGCCCCTTCTGCATATTGTTACCGTAAATCCAACTCGGGAAAGCAAGAACGATCTACCATGGAAGCTGATAGCGACT TATCCTCACAAAAGCAAGTCCAGCAATGTGGCATGGCAGCCAAATATGCACCAGATGTTGCTATCAACATAGACTCCAACCCTTTTTTTATGACACGGAT AGGAGTGAACAAGGTAGAGCATGTGGATGACCGGGTGATGATTGACACAAGTTTGCTGCAGGCCAAGGCTCAGTACGGTGGGATTAGTGCTTCTGCCGCT GCCGCCTCTACAGCTGCTCACAGAAAGGTTGGAACTGTTCAATATGGTATGACAAGGATGTACTAG
AA sequence Show only first row Show all	>Potri.002G059900.1 pacid=42778640 polypeptide=Potri.002G059900.1.p locus=Potri.002G059900 ID=Potri.002G059900.1.v4.1 annot-version=v4.1 MQQDQRKKNSTEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFK DIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPSTIFWTDYVATRWYRAPEL CGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISLVRNDKARRYLTSMRKKQPVPLAQKFPNADPLALRLLERLLAFD PKDRPTAEEALADPYFKGLARVEREPSCQPITKMEFEFERRRVTKEDVRELIFREILEYHPQLLKDYLNGTERTNFLYPSAVDQFRKQFAHLEENGGKSG PVIPLERKHASLPRSTIVHSSSIPTKEQQNLASFKDRHTAEEAYNKNPRDTEGIPVNISRTLQAQQRVPLAKPGKVVGQVVSYENGSIVKDARDPRTYIR SAVLPPHAAPSAYCYRKSNSGKQERSTMEADSDLSSQKQVQQCGMAAKYAPDVAINIDSNPFFMTRIGVNKVEHVDDRVMIDTSLLQAKAQYGGISASAA AASTAAHRKVGTVQYGMTRMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.002G059900 [exp]	0	1	Pt-ATMPK20.2
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.004G078800 [exp]	1.73	0.7982
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.012G039400 [exp]	2.23	0.8218	MYB.41
AT3G20720			unknown protein		Potri.011G132800 [exp]	11.83	0.7492
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	12.72	0.8080
					Potri.019G037300 [exp]	13.41	0.6962
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Potri.001G472700 [exp]	15.23	0.7391
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.018G068700 [exp]	18.57	0.7872
AT4G38040			Exostosin family protein (.1)		Potri.019G036500 [exp]	22.24	0.7551
AT1G15260			unknown protein		Potri.018G080001 [exp]	23.06	0.7900
AT2G30933			Carbohydrate-binding X8 domain...		Potri.002G059600 [exp]	24.00	0.7764

Compare expression of checked genes

Potri.002G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.